Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004958A_C01 KMC004958A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD44161.1|AF130423_1 cryptochrome 1 [Lycopersicon esculentum... 91 1e-17
dbj|BAB70688.2| cryptochrome 1b [Oryza sativa (japonica cultivar... 67 2e-10
emb|CAD40850.1| OSJNBa0086B14.22 [Oryza sativa (japonica cultiva... 67 2e-10
gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor] 63 3e-09
dbj|BAB70686.1| cryptochrome 1a [Oryza sativa (japonica cultivar... 62 5e-09
>gb|AAD44161.1|AF130423_1 cryptochrome 1 [Lycopersicon esculentum]
gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1
[Lycopersicon esculentum]
Length = 679
Score = 90.9 bits (224), Expect = 1e-17
Identities = 39/55 (70%), Positives = 46/55 (82%)
Frame = -1
Query: 620 RERDGGVVPVWSPPASSFSEPFVDDENGIGASSSYLQRHPQSHPMMNWTRLPPTG 456
RERDGGVVP WSP +S++S+ +V D+NGIG SSSYLQRHPQSH +MNW RL TG
Sbjct: 625 RERDGGVVPTWSPSSSNYSDQYVGDDNGIGTSSSYLQRHPQSHQLMNWQRLSQTG 679
>dbj|BAB70688.2| cryptochrome 1b [Oryza sativa (japonica cultivar-group)]
Length = 700
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -1
Query: 614 RDGGVVPVWSPPASS-FSEPFVDDENGIGASSSYLQRHPQSHPMMNWTRL 468
R+GGVVPVWSPPA+S SE F DE I +S SYL RHPQSH +MNW++L
Sbjct: 648 REGGVVPVWSPPAASDHSETFASDEADI-SSRSYLDRHPQSHRLMNWSQL 696
>emb|CAD40850.1| OSJNBa0086B14.22 [Oryza sativa (japonica cultivar-group)]
Length = 693
Score = 66.6 bits (161), Expect = 2e-10
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -1
Query: 614 RDGGVVPVWSPPASS-FSEPFVDDENGIGASSSYLQRHPQSHPMMNWTRL 468
R+GGVVPVWSPPA+S SE F DE I +S SYL RHPQSH +MNW++L
Sbjct: 641 REGGVVPVWSPPAASDHSETFASDEADI-SSRSYLDRHPQSHRLMNWSQL 689
>gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
Length = 691
Score = 63.2 bits (152), Expect = 3e-09
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = -1
Query: 614 RDGGVVPVWSPPASS-FSEPFVDDENGIGASSSYLQRHPQSHPMMNWTRL 468
R+G VVPVWSPPA+S SE F DE + +S SYL RHPQSH +MNW++L
Sbjct: 639 REGAVVPVWSPPAASGHSETFAADEADV-SSRSYLDRHPQSHRLMNWSQL 687
>dbj|BAB70686.1| cryptochrome 1a [Oryza sativa (japonica cultivar-group)]
Length = 710
Score = 62.4 bits (150), Expect = 5e-09
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = -1
Query: 614 RDGGVVPVWSPPASSF-SEPFVDDENGIGASSSYLQRHPQSHPMMNWTRL 468
R+GGVVPVWSPPA+S S+ + DE I S SYL RHPQSH +MNW++L
Sbjct: 658 REGGVVPVWSPPAASGPSDHYAADEADI-TSRSYLDRHPQSHTLMNWSQL 706
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,259,770
Number of Sequences: 1393205
Number of extensions: 11457641
Number of successful extensions: 23181
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23166
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
