Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004956A_C01 KMC004956A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568380.1| oligosaccharyl transferase STT3-like protein; p... 132 1e-30
gb|AAK91413.1| AT5g19690/T29J13_110 [Arabidopsis thaliana] gi|16... 130 6e-30
ref|XP_114346.2| similar to Oligosaccharyl transferase 3 [Drosop... 67 8e-11
ref|XP_135245.1| RIKEN cDNA 1300006C19 [Mus musculus] 67 8e-11
dbj|BAB31390.1| unnamed protein product [Mus musculus] 67 8e-11
>ref|NP_568380.1| oligosaccharyl transferase STT3-like protein; protein id:
At5g19690.1, supported by cDNA: gi_15215735, supported
by cDNA: gi_15810304, supported by cDNA: gi_16974314
[Arabidopsis thaliana] gi|15810305|gb|AAL07040.1|
putative oligosaccharyl transferase STT3 [Arabidopsis
thaliana]
Length = 779
Score = 132 bits (333), Expect = 1e-30
Identities = 63/81 (77%), Positives = 70/81 (85%)
Frame = -2
Query: 452 SYYRFVETDGKAFDRVSRTEIGKKHIKLTHFEEVFTTHHWMVRIYKLKPPKNRIRGKAKK 273
SYYRFVETDGK +DRV RTEIGKKH KLTHFEEVFT+HHWMVR+YKLKPP+NRIRGKAKK
Sbjct: 700 SYYRFVETDGKGYDRVRRTEIGKKHFKLTHFEEVFTSHHWMVRLYKLKPPRNRIRGKAKK 759
Query: 272 SKSKASSKTTSKRKGPKRNPF 210
KSK SS +S K K+NP+
Sbjct: 760 LKSKTSSGLSS--KSAKKNPW 778
>gb|AAK91413.1| AT5g19690/T29J13_110 [Arabidopsis thaliana]
gi|16974315|gb|AAL31142.1| AT5g19690/T29J13_110
[Arabidopsis thaliana]
Length = 779
Score = 130 bits (327), Expect = 6e-30
Identities = 62/81 (76%), Positives = 69/81 (84%)
Frame = -2
Query: 452 SYYRFVETDGKAFDRVSRTEIGKKHIKLTHFEEVFTTHHWMVRIYKLKPPKNRIRGKAKK 273
SYYRFVETDGK +DRV RTEIGKKH KLTHFEEVF +HHWMVR+YKLKPP+NRIRGKAKK
Sbjct: 700 SYYRFVETDGKGYDRVRRTEIGKKHFKLTHFEEVFKSHHWMVRLYKLKPPRNRIRGKAKK 759
Query: 272 SKSKASSKTTSKRKGPKRNPF 210
KSK SS +S K K+NP+
Sbjct: 760 LKSKTSSGLSS--KSAKKNPW 778
>ref|XP_114346.2| similar to Oligosaccharyl transferase 3 [Drosophila melanogaster]
[Homo sapiens] gi|19879589|gb|AAL71884.1| source of
immunodominant MHC-associated peptides [Homo sapiens]
Length = 826
Score = 67.0 bits (162), Expect = 8e-11
Identities = 40/85 (47%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Frame = -2
Query: 452 SYYRFVETD-----GKAFDRVSRTEIGKKHIKLTHFEEVFTTHHWMVRIYKLKPPKNRIR 288
SYYRF E FDR EIG K IK H EE FT+ HW+VRIYK+K P NR
Sbjct: 721 SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET 780
Query: 287 GKAKK------SKSKASSKTTSKRK 231
K K K SK T+KRK
Sbjct: 781 LDHKPRVTNIFPKQKYLSKKTTKRK 805
>ref|XP_135245.1| RIKEN cDNA 1300006C19 [Mus musculus]
Length = 823
Score = 67.0 bits (162), Expect = 8e-11
Identities = 40/85 (47%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Frame = -2
Query: 452 SYYRFVETD-----GKAFDRVSRTEIGKKHIKLTHFEEVFTTHHWMVRIYKLKPPKNR-- 294
SYYRF E FDR EIG K IK H EE FT+ HW+VRIYK+K P NR
Sbjct: 718 SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET 777
Query: 293 IRGKAKKS----KSKASSKTTSKRK 231
+ K + + K K SK T+KRK
Sbjct: 778 LGHKPRVTNIVPKQKYLSKKTTKRK 802
>dbj|BAB31390.1| unnamed protein product [Mus musculus]
Length = 823
Score = 67.0 bits (162), Expect = 8e-11
Identities = 40/85 (47%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Frame = -2
Query: 452 SYYRFVETD-----GKAFDRVSRTEIGKKHIKLTHFEEVFTTHHWMVRIYKLKPPKNR-- 294
SYYRF E FDR EIG K IK H EE FT+ HW+VRIYK+K P NR
Sbjct: 718 SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET 777
Query: 293 IRGKAKKS----KSKASSKTTSKRK 231
+ K + + K K SK T+KRK
Sbjct: 778 LGHKPRVTNIVPKQKYLSKKTTKRK 802
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,292,470
Number of Sequences: 1393205
Number of extensions: 7189853
Number of successful extensions: 19205
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 18542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19169
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
