Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004951A_C01 KMC004951A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96590 hypothetical protein T24C10.3 [imported] - Arabidops... 53 3e-06
gb|AAG51127.1|AC069144_24 unknown protein [Arabidopsis thaliana] 49 8e-05
dbj|BAC57795.1| P0045A07.6 [Oryza sativa (japonica cultivar-group)] 38 0.14
>pir||E96590 hypothetical protein T24C10.3 [imported] - Arabidopsis thaliana
gi|9857517|gb|AAG00872.1|AC064840_3 Unknown protein
[Arabidopsis thaliana]
Length = 891
Score = 53.1 bits (126), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (61%), Gaps = 2/48 (4%)
Frame = -3
Query: 651 LSALPADLIPGLNLVTWNGKQYFVKLINLWVNLLSSDPPK--N*HLPI 514
+S L D++PG+ V WNG+ Y + L N+W NL+S DPP H PI
Sbjct: 842 ISGLNTDIVPGIKTVEWNGEHYLLPLANIWANLISRDPPNLPGHHFPI 889
>gb|AAG51127.1|AC069144_24 unknown protein [Arabidopsis thaliana]
Length = 898
Score = 48.5 bits (114), Expect = 8e-05
Identities = 22/49 (44%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
Frame = -3
Query: 651 LSALPADLIP-GLNLVTWNGKQYFVKLINLWVNLLSSDPPK--N*HLPI 514
+S L D++P G+ V WNG+ Y + L N+W NL+S DPP H PI
Sbjct: 848 ISGLNTDIVPAGIKTVEWNGEHYLLPLANIWANLISRDPPNLPGHHFPI 896
>dbj|BAC57795.1| P0045A07.6 [Oryza sativa (japonica cultivar-group)]
Length = 348
Score = 37.7 bits (86), Expect = 0.14
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = -1
Query: 404 PYFWFVG*GLWHSSSSP*SEGRLYVEYK---SHDCMAQAKSPIKIILSSIGYHSFKGILR 234
P WF LW S+ P S RL ++ ++ Q + PI S+ + K +L
Sbjct: 72 PGLWF----LWSKSAGPSSATRLLLDANVSTAYQPDNQGQYPIHAAASADSLEAVKALLE 127
Query: 233 KCYRCITTSDKKNYTILHEGMILLSYQMM 147
KC C T D + T LH + S+ ++
Sbjct: 128 KCPDCATLRDARGRTFLHAAVEKKSFDVI 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,494,067
Number of Sequences: 1393205
Number of extensions: 10994202
Number of successful extensions: 21492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21489
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
