Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004949A_C01 KMC004949A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_203538.1| dedicator of cyto-kinesis 2 [Mus musculus] gi|1... 35 0.48
pir||T04588 hypothetical protein F23E13.80 - Arabidopsis thalian... 31 9.1
>ref|NP_203538.1| dedicator of cyto-kinesis 2 [Mus musculus] gi|13195147|gb|AAK13045.1|
HCH [Mus musculus]
Length = 1828
Score = 35.4 bits (80), Expect = 0.48
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = -2
Query: 194 YDHIQSPCINLLCTLLLTYIEAPPSHAYLSTFLVIYTAELSKLGEVH 54
YDHIQ + LL T+ T I HA +S F TA L ++G+ H
Sbjct: 904 YDHIQEIMVQLLRTVNRTVITMGRDHALISHFEACMTAILDQMGDQH 950
>pir||T04588 hypothetical protein F23E13.80 - Arabidopsis thaliana
gi|2961378|emb|CAA18125.1| putative protein [Arabidopsis
thaliana] gi|7270572|emb|CAB80290.1| putative protein
[Arabidopsis thaliana]
Length = 852
Score = 31.2 bits (69), Expect = 9.1
Identities = 24/84 (28%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 228 LANRYNNGLVTKISHYYSKTHNFNSYG--HHCYLKPASGLAYIMIFNSILQHFFATIFSN 401
LA +++ G+V+ YY K+ F S + YL L+ + F Q++ AT F
Sbjct: 113 LAKKFDAGIVSLEHRYYGKSSPFKSLATKNLKYLSSKQALSDLATFR---QYYQATCFGI 169
Query: 402 CLAPKRMPWTEIIFDVSDKRSSRI 473
CL W + +V RSS +
Sbjct: 170 CL------WMQDSLNVKFNRSSNV 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,112,260
Number of Sequences: 1393205
Number of extensions: 8884138
Number of successful extensions: 20966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20958
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
