Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004946A_C01 KMC004946A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA23819.1| hypothetical protein [Fusobacterium nucleatum sub... 33 3.5
ref|NP_703918.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.5
>gb|EAA23819.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 115
Score = 32.7 bits (73), Expect = 3.5
Identities = 15/49 (30%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
Frame = +1
Query: 118 LFVSTN---LKPQLIFFFYFV*IIFMDNLQNLHYESFVYFSVSNHPLIF 255
LF+ N LK ++FF Y+ +I +++++ ++YE Y N+P++F
Sbjct: 59 LFIKENNLILKKYILFFCYYSKVIKLEDIRKIYYEKVTY---KNYPVLF 104
>ref|NP_703918.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498579|emb|CAD50530.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1758
Score = 32.3 bits (72), Expect = 4.5
Identities = 29/97 (29%), Positives = 46/97 (46%), Gaps = 1/97 (1%)
Frame = +3
Query: 255 FLTHLFLLIYL*KFLQKVAKNSIRVV-LLLNPLSRARVLIVQSWGKWYLLFIILFHLILI 431
+L + LL+Y+ A N++ V L LN L + L + + F+IL+ L +
Sbjct: 154 YLLYNSLLLYM-----NNADNNMNVYNLCLNFLKNYQCLNTDKVIENFSFFLILYFLNIK 208
Query: 432 HRK*DSIL*LQFQIIHYTISINYK*YSIEYNIYKLYS 542
RK L I Y +Y + ++YNIYKLY+
Sbjct: 209 RRKFQECL----DINEYAYKNDYLLHPLQYNIYKLYT 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,277,282
Number of Sequences: 1393205
Number of extensions: 9558000
Number of successful extensions: 19954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19944
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
