Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004945A_C01 KMC004945A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB82852.1| protein kinase MK6 [Mesembryanthemum crystallinum] 39 0.047
pir||S42864 protein kinase (EC 2.7.1.-) - common ice plant (frag... 39 0.047
ref|NP_188973.2| putative protein kinase; protein id: At3g23310.... 35 0.89
gb|EAA32573.1| predicted protein [Neurospora crassa] 33 2.0
ref|NP_193424.1| disease resistance protein (TIR-NBS-LRR class),... 33 3.4
>emb|CAB82852.1| protein kinase MK6 [Mesembryanthemum crystallinum]
Length = 564
Score = 38.9 bits (89), Expect = 0.047
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 441 ESAMAANQPVQGSFLNLLPPQMEVPE 364
E+A + +Q VQGSFLNLLPPQ+EV +
Sbjct: 528 EAATSGDQSVQGSFLNLLPPQLEVSQ 553
>pir||S42864 protein kinase (EC 2.7.1.-) - common ice plant (fragment)
Length = 479
Score = 38.9 bits (89), Expect = 0.047
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 441 ESAMAANQPVQGSFLNLLPPQMEVPE 364
E+A + +Q VQGSFLNLLPPQ+EV +
Sbjct: 443 EAATSGDQSVQGSFLNLLPPQLEVSQ 468
>ref|NP_188973.2| putative protein kinase; protein id: At3g23310.1, supported by
cDNA: gi_20465360 [Arabidopsis thaliana]
gi|11994315|dbj|BAB02274.1| protein kinase [Arabidopsis
thaliana] gi|17381026|gb|AAL36325.1| putative protein
kinase [Arabidopsis thaliana] gi|20465361|gb|AAM20084.1|
putative protein kinase [Arabidopsis thaliana]
Length = 568
Score = 34.7 bits (78), Expect = 0.89
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -1
Query: 447 DDESAMAANQPVQGSFLNLLPPQMEVPEKNE 355
+DESA + QGSF+ LLP Q+EVPEK +
Sbjct: 518 EDESASSTTSH-QGSFMKLLPTQIEVPEKED 547
>gb|EAA32573.1| predicted protein [Neurospora crassa]
Length = 1114
Score = 33.5 bits (75), Expect = 2.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 209 FWFWIAGFLADWDIYCVEKSFKVYILQF 126
FWFW AGF+ D I E F +YI+ F
Sbjct: 376 FWFWSAGFMLDEVIGFNEHGFSLYIMSF 403
>ref|NP_193424.1| disease resistance protein (TIR-NBS-LRR class), putative; protein
id: At4g16900.1 [Arabidopsis thaliana]
gi|7268442|emb|CAB80962.1| disease resistance RPP5 like
protein [Arabidopsis thaliana]
Length = 1072
Score = 32.7 bits (73), Expect = 3.4
Identities = 12/47 (25%), Positives = 25/47 (52%)
Frame = -2
Query: 149 FKVYILQFTFYLSCHGLHISCN*VTAESFHPFLVLYIGFDYYRFSFW 9
F++ IL+ + C G++++ + + E ++ LY +Y R FW
Sbjct: 844 FRLTILKLVDFTECRGVNVAMSDASVEDHSSYIPLYENIEYTRHRFW 890
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,927,673
Number of Sequences: 1393205
Number of extensions: 9934936
Number of successful extensions: 22776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22769
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
