Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004942A_C01 KMC004942A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00001113.1| hypothetical protein [Ferroplasma acidarmanus] 35 0.60
ref|NP_757539.1| predicted coiled-coil structure containing prot... 35 1.0
ref|NP_647471.1| otoancorin [Mus musculus] gi|20465181|gb|AAL277... 34 1.8
ref|XP_145987.1| similar to MESOTHELIN PRECURSOR (CAK1 ANTIGEN) ... 34 1.8
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 33 3.9
>gb|ZP_00001113.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 338
Score = 35.4 bits (80), Expect = 0.60
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +1
Query: 115 LLQSDSVAS--QILLPKTIFNLLISFVFLYLISMAIQFFRCYFLVMFVRIS*RIDYPLVF 288
LL S +V S I+LP+TIF L+I+F+ Y ++ I F+ R+S I +PL+F
Sbjct: 76 LLYSGTVKSAVSIILPETIFFLVITFLISYALAYLIGFYSGTTFRTVRRLSMSI-FPLLF 134
Query: 289 NTICSSGSTLISLYN 333
SG TL+++++
Sbjct: 135 -LYMVSGLTLVTVFS 148
>ref|NP_757539.1| predicted coiled-coil structure containing protein [Mycoplasma
penetrans] gi|26453611|dbj|BAC43943.1| predicted
coiled-coil structure containing protein [Mycoplasma
penetrans]
Length = 1112
Score = 34.7 bits (78), Expect = 1.0
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -1
Query: 300 TNGVKNKWVVYSSADSDEHNKEITTKKLDRH*NKVEENK*NEKIENGFG*QD--LRSYRI 127
+N NK+ + +++SD H K I KK +H N+ + NK N+ I+ D ++ +
Sbjct: 548 SNNKSNKYSNFINSNSDSHKKNINPKKFGKHQNE-KLNKLNQSIDEKISNIDSQFKNLQE 606
Query: 126 TLQ*RFKEMTKR-KTSIDRLSL 64
T Q +F E+ + K ID++++
Sbjct: 607 TNQNKFNEINESLKKIIDQINV 628
>ref|NP_647471.1| otoancorin [Mus musculus] gi|20465181|gb|AAL27794.1| otoancorin
[Mus musculus]
Length = 1137
Score = 33.9 bits (76), Expect = 1.8
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 323 LFIILFQFFN*YFSLCSVDQ----DLNHWEFSASDLRSFVFGTL 442
LF+ LFQ+F+ FSL S DQ +WE S S + F+ TL
Sbjct: 583 LFLALFQYFDNNFSLLSPDQVNCLAWKYWEVSRSSMPPFLLATL 626
>ref|XP_145987.1| similar to MESOTHELIN PRECURSOR (CAK1 ANTIGEN) [Mus musculus]
Length = 1227
Score = 33.9 bits (76), Expect = 1.8
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 323 LFIILFQFFN*YFSLCSVDQ----DLNHWEFSASDLRSFVFGTL 442
LF+ LFQ+F+ FSL S DQ +WE S S + F+ TL
Sbjct: 630 LFLALFQYFDNNFSLLSPDQVNCLAWKYWEVSRSSMPPFLLATL 673
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 32.7 bits (73), Expect = 3.9
Identities = 16/63 (25%), Positives = 31/63 (48%)
Frame = +3
Query: 180 FICFPLPYFNGDPIFSLLFPCYVRQNQLKNRLPTCF*HHLFIWVYFDFSL*SFFSFSISI 359
F+C LP + + L PC+V + L+ L C+ +YF +L +F ++ +
Sbjct: 42 FVCLFLPCIMSNSLLYLFLPCFVSISSLQLCLILCY-------IYFFLALCVYFFLALCL 94
Query: 360 LVC 368
++C
Sbjct: 95 ILC 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,368,823
Number of Sequences: 1393205
Number of extensions: 10426709
Number of successful extensions: 21946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21929
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
