Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004940A_C01 KMC004940A_c01
(952 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98159.1| RAB1B [Lotus japonicus] 323 e-100
pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fav... 328 9e-99
emb|CAA98161.1| RAB1D [Lotus japonicus] 332 2e-98
gb|AAB97115.1| small GTP-binding protein [Glycine max] 328 6e-98
emb|CAA98162.1| RAB1E [Lotus japonicus] 332 8e-98
>emb|CAA98159.1| RAB1B [Lotus japonicus]
Length = 194
Score = 323 bits (827), Expect(2) = e-100
Identities = 164/165 (99%), Positives = 164/165 (99%)
Frame = -2
Query: 837 FKLLLXGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE 658
FKLLL GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE
Sbjct: 1 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQE 60
Query: 657 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTAN 478
RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTAN
Sbjct: 61 RFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTAN 120
Query: 477 RAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM 343
RAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM
Sbjct: 121 RAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM 165
Score = 64.3 bits (155), Expect(2) = e-100
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -3
Query: 341 ASQPANNARPPTVNISGKPVGQSSGCCSS 255
ASQPANNARPPTVNISGKPVGQSSGCCSS
Sbjct: 166 ASQPANNARPPTVNISGKPVGQSSGCCSS 194
>pir||S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean
gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum
sativum] gi|452359|emb|CAA82707.1| guanine nucleotide
regulatory protein [Vicia faba] gi|738942|prf||2001457K
GTP-binding protein gi|1098293|prf||2115367A small
GTP-binding protein
Length = 202
Score = 328 bits (841), Expect(2) = 9e-99
Identities = 166/178 (93%), Positives = 170/178 (95%), Gaps = 1/178 (0%)
Frame = -2
Query: 861 MNPEYDYLFKLLLXGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 682
MNPEYDYLFKLLL GDSGVGKSCLLLRFADDSYI+SYISTIGVDFKIRTVEQD KTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 681 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 502
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 501 NKSDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM-GKPT 331
NK DLT NRAV YETAKAFADEIGIPFMETSAKD+TNVEQAFMAMA+SIK RM +PT
Sbjct: 121 NKCDLTENRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKERMASQPT 178
Score = 55.5 bits (132), Expect(2) = 9e-99
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = -3
Query: 341 ASQPANNARPPTVNISGKPVGQSSGCCSS 255
ASQP NNARPPTV I G+PVGQ SGCCSS
Sbjct: 174 ASQPTNNARPPTVQIRGQPVGQKSGCCSS 202
>emb|CAA98161.1| RAB1D [Lotus japonicus]
Length = 203
Score = 332 bits (851), Expect(2) = 2e-98
Identities = 166/173 (95%), Positives = 169/173 (96%)
Frame = -2
Query: 861 MNPEYDYLFKLLLXGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 682
MNPEYDYLFKLLL GDSGVGKSCLLLRF DDSYIESYISTIGVDFKIRTVEQDAKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 60
Query: 681 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 502
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 501 NKSDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM 343
NK DLTANRAVSY+TAK FAD+IGIPFMETSAKDATNVEQAFMAM+ASIKNRM
Sbjct: 121 NKCDLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMAMSASIKNRM 173
Score = 50.8 bits (120), Expect(2) = 2e-98
Identities = 24/30 (80%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Frame = -3
Query: 341 ASQP-ANNARPPTVNISGKPVGQSSGCCSS 255
ASQP ANN RPPTV I G+PVGQ SGCCSS
Sbjct: 174 ASQPSANNGRPPTVQIRGQPVGQKSGCCSS 203
>gb|AAB97115.1| small GTP-binding protein [Glycine max]
Length = 202
Score = 328 bits (840), Expect(2) = 6e-98
Identities = 165/173 (95%), Positives = 167/173 (96%)
Frame = -2
Query: 861 MNPEYDYLFKLLLXGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 682
MNPEYDYLFKLLL GDSGVGKSCLLLRF+DDSYIESYISTIGVDFKIRTVEQD KTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 681 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 502
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 501 NKSDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM 343
NK DL ANRAVSYETAKAFAD IGIPFMETSAKDATNVEQAFMAM ASIK+RM
Sbjct: 121 NKCDLEANRAVSYETAKAFADGIGIPFMETSAKDATNVEQAFMAMTASIKDRM 173
Score = 53.1 bits (126), Expect(2) = 6e-98
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3
Query: 341 ASQPANNARPPTVNISGKPVGQSSGCCSS 255
ASQPANNARPPTV I G+PV Q GCCSS
Sbjct: 174 ASQPANNARPPTVQIRGQPVAQKGGCCSS 202
>emb|CAA98162.1| RAB1E [Lotus japonicus]
Length = 203
Score = 332 bits (851), Expect(2) = 8e-98
Identities = 166/173 (95%), Positives = 169/173 (96%)
Frame = -2
Query: 861 MNPEYDYLFKLLLXGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 682
MNPEYDYLFKLLL GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQ 60
Query: 681 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 502
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 501 NKSDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRM 343
NK DLTANRAVSY+TAK FAD+IGIPFMETSAKDATNVEQAFM M+ASIKNRM
Sbjct: 121 NKCDLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMGMSASIKNRM 173
Score = 48.5 bits (114), Expect(2) = 8e-98
Identities = 23/30 (76%), Positives = 24/30 (79%), Gaps = 1/30 (3%)
Frame = -3
Query: 341 ASQP-ANNARPPTVNISGKPVGQSSGCCSS 255
ASQP ANN RPPTV I G+PVG SGCCSS
Sbjct: 174 ASQPSANNGRPPTVQIRGQPVGPKSGCCSS 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 851,341,866
Number of Sequences: 1393205
Number of extensions: 19570329
Number of successful extensions: 99926
Number of sequences better than 10.0: 2424
Number of HSP's better than 10.0 without gapping: 74713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92641
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53523731176
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
