Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004939A_C01 KMC004939A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196925.1| leucine-rich repeat transmembrane protein kinas... 154 1e-36
ref|NP_568971.1| leucine-rich repeat transmembrane protein kinas... 128 5e-29
gb|AAM64615.1| receptor-like protein kinase-like protein [Arabid... 128 5e-29
ref|NP_566213.1| leucine-rich repeat transmembrane protein kinas... 78 1e-13
gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thal... 77 2e-13
>ref|NP_196925.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g14210.1 [Arabidopsis thaliana]
gi|9757802|dbj|BAB08300.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
Length = 812
Score = 154 bits (388), Expect = 1e-36
Identities = 75/106 (70%), Positives = 88/106 (82%)
Frame = -2
Query: 530 KLEDDVYNFGFILFESLAGPIASDKGEAFFVDEKASFGSQDGRRKIVDPVVLTSCCQESL 351
K EDDVYNFGFIL ESL GP+ + KGEAF ++E SFGSQDGR+KIV P VLT+ QESL
Sbjct: 705 KREDDVYNFGFILLESLIGPVPTTKGEAFLLNEMTSFGSQDGRQKIVSPTVLTTSSQESL 764
Query: 350 SIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQATADADQKSDS 213
SIAISI KC+ E S+RPSFEDVLWNLQYAAQ+Q+ ADA++KSD+
Sbjct: 765 SIAISIANKCVLLEPSARPSFEDVLWNLQYAAQMQSAADAERKSDT 810
>ref|NP_568971.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g63410.1, supported by cDNA: 31105. [Arabidopsis
thaliana] gi|28392931|gb|AAO41901.1| putative
leucine-rich repeat transmembrane protein kinase
[Arabidopsis thaliana] gi|28827534|gb|AAO50611.1|
putative leucine-rich repeat transmembrane protein
kinase [Arabidopsis thaliana]
Length = 680
Score = 128 bits (322), Expect = 5e-29
Identities = 61/108 (56%), Positives = 80/108 (73%)
Frame = -2
Query: 548 KSCQMEKLEDDVYNFGFILFESLAGPIASDKGEAFFVDEKASFGSQDGRRKIVDPVVLTS 369
KS QM +LEDDVY+FG IL +S+ GP S + EAF DE AS S++GRR++V+P V +
Sbjct: 572 KSWQMSRLEDDVYSFGLILLQSIVGPSVSAREEAFLRDELASLESEEGRRRMVNPTVQAT 631
Query: 368 CCQESLSIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQATADADQ 225
C SL I++ KC++PES SRPSFED+LWNLQYA+Q+QA +D DQ
Sbjct: 632 CRNGSLIRVITLMNKCVSPESLSRPSFEDILWNLQYASQLQAASDGDQ 679
>gb|AAM64615.1| receptor-like protein kinase-like protein [Arabidopsis thaliana]
Length = 680
Score = 128 bits (322), Expect = 5e-29
Identities = 61/108 (56%), Positives = 80/108 (73%)
Frame = -2
Query: 548 KSCQMEKLEDDVYNFGFILFESLAGPIASDKGEAFFVDEKASFGSQDGRRKIVDPVVLTS 369
KS QM +LEDDVY+FG IL +S+ GP S + EAF DE AS S++GRR++V+P V +
Sbjct: 572 KSWQMSRLEDDVYSFGLILLQSIVGPSVSAREEAFLRDELASLESEEGRRRMVNPTVQAT 631
Query: 368 CCQESLSIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQATADADQ 225
C SL I++ KC++PES SRPSFED+LWNLQYA+Q+QA +D DQ
Sbjct: 632 CRNGSLIRVITLMNKCVSPESLSRPSFEDILWNLQYASQLQAASDGDQ 679
>ref|NP_566213.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g03770.1, supported by cDNA: 116488. [Arabidopsis
thaliana] gi|21536973|gb|AAM61314.1| unknown
[Arabidopsis thaliana]
Length = 802
Score = 77.8 bits (190), Expect = 1e-13
Identities = 45/107 (42%), Positives = 61/107 (56%), Gaps = 5/107 (4%)
Frame = -2
Query: 551 PKSCQMEKLED--DVYNFGFILFESLAGPIASDKGEAFFVDEK--ASFGSQDG-RRKIVD 387
PK K ED D+Y+FG IL E + G K + + E+ AS + DG RR +VD
Sbjct: 649 PKGTPSIKDEDKIDIYDFGVILLELIVGRPLRAKSQVDVLKEQLQASISADDGARRSMVD 708
Query: 386 PVVLTSCCQESLSIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQ 246
P V +C +SL + I +C+ + RPS EDVLWNLQ+A+QVQ
Sbjct: 709 PTVHRACSDQSLKTMMEICVRCLLKDPLERPSIEDVLWNLQFASQVQ 755
>gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thaliana]
Length = 803
Score = 77.0 bits (188), Expect = 2e-13
Identities = 45/108 (41%), Positives = 61/108 (55%), Gaps = 5/108 (4%)
Frame = -2
Query: 554 NPKSCQMEKLED--DVYNFGFILFESLAGPIASDKGEAFFVDEK--ASFGSQDG-RRKIV 390
NP K ED D+Y+FG IL E + G K + + E+ AS + DG RR +V
Sbjct: 648 NPLFLNSIKDEDKIDIYDFGVILLELIVGRPLRAKSQVDVLKEQLQASISADDGARRSMV 707
Query: 389 DPVVLTSCCQESLSIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQ 246
DP V +C +SL + I +C+ + RPS EDVLWNLQ+A+QVQ
Sbjct: 708 DPTVHRACSDQSLKTMMEICVRCLLKDPLERPSIEDVLWNLQFASQVQ 755
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,498,431
Number of Sequences: 1393205
Number of extensions: 10349528
Number of successful extensions: 24999
Number of sequences better than 10.0: 546
Number of HSP's better than 10.0 without gapping: 23773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24505
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
