Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004938A_C01 KMC004938A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89497.1| P0022F10.13 [Oryza sativa (japonica cultivar-gro... 56 2e-07
gb|AAO34495.1| putative auxin response factor [Oryza sativa (jap... 35 0.54
gb|AAO34490.1| putative auxin response factor [Oryza sativa (jap... 35 0.54
ref|NP_688997.1| conserved hypothetical protein [Streptococcus a... 33 2.0
ref|NP_251075.1| probable acylase [Pseudomonas aeruginosa PA01] ... 32 3.5
>dbj|BAB89497.1| P0022F10.13 [Oryza sativa (japonica cultivar-group)]
Length = 402
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = -2
Query: 523 PYQFSAAHLPAYKTEIMLRNSRGECWTVNSVPDAKGRTVHHLLWGMGYAFVRDNDINFGD 344
P FS HLP +T+++LR+ G+ W+V +P+ + R W AF R N + GD
Sbjct: 307 PTGFSRQHLPRERTDVVLRDPGGKVWSVLYIPNTRDRLSRG--W---CAFARGNCLEEGD 361
Query: 343 TCIFELVAQCEMQVYI 296
C+FELVA E +V+I
Sbjct: 362 YCVFELVAAAEFRVHI 377
>gb|AAO34495.1| putative auxin response factor [Oryza sativa (japonica
cultivar-group)]
Length = 545
Score = 35.0 bits (79), Expect = 0.54
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 517 QFSAAHLP-AYKTEIMLRNSRGECWTVNSVPDAKGRTVHHLLWGMGYAFVRDNDINFGDT 341
QF+ +LP +T +L G+ W V P + + L W FVRDN + D
Sbjct: 463 QFAIRYLPEGEQTLTLLTTGTGKAWQVKMRPRSGDARMFTLGWR---DFVRDNRLQTEDI 519
Query: 340 CIFELVAQCE----MQVYI 296
C+F+L E M+V+I
Sbjct: 520 CLFQLTKNSERGLAMKVHI 538
>gb|AAO34490.1| putative auxin response factor [Oryza sativa (japonica
cultivar-group)]
Length = 519
Score = 35.0 bits (79), Expect = 0.54
Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 523 PYQFSAAHLPAYKTEIML-RNSRGECWTVNSVPDAKGRTVHHLLWGMGYAFVRDNDINFG 347
P ++++AH P I L R + + W G ++L+G FVRDN + G
Sbjct: 267 PKRYASAHFPLESQTITLQRQGKNKKWYPMFYIRKDGSG--YMLYGCWKNFVRDNHVKEG 324
Query: 346 DTCIFEL 326
D CIF L
Sbjct: 325 DMCIFHL 331
>ref|NP_688997.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|22535054|gb|AAN00870.1|AE014282_12 conserved
hypothetical protein [Streptococcus agalactiae 2603V/R]
Length = 160
Score = 33.1 bits (74), Expect = 2.0
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = -2
Query: 442 VNSVPDAKGRTVHHLLWGMGYAFVRDNDINFGDTCIF-ELVAQCEMQVY------ISGVG 284
V +V + VH ++ FV D D NFGD C+ ++ + E+ Y + GVG
Sbjct: 67 VENVDSELVKAVHQVIGYTASDFV-DYDFNFGDCCLLSDVTTRRELGEYYFDELGVQGVG 125
Query: 283 KEGLDHHNGHAKLNR 239
KE L+ + H R
Sbjct: 126 KEALEMYFDHEAYGR 140
>ref|NP_251075.1| probable acylase [Pseudomonas aeruginosa PA01]
gi|11350910|pir||H83348 probable acylase PA2385
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9948425|gb|AAG05773.1|AE004664_10 probable acylase
[Pseudomonas aeruginosa PAO1]
Length = 762
Score = 32.3 bits (72), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 448 WTVNSVPDAKGRTVHHLLWGMGYAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLD 269
WT VP + + L +G+GYA+ RDN + + A+ E Y GK +
Sbjct: 37 WTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIV---TARGERARYFGSEGKSSAE 93
Query: 268 HHN 260
N
Sbjct: 94 LDN 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,309,348
Number of Sequences: 1393205
Number of extensions: 9478535
Number of successful extensions: 23903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23899
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
