Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004935A_C01 KMC004935A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi... 39 0.003
gb|EAA17593.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 41 0.015
ref|NP_705495.1| malaria antigen [Plasmodium falciparum 3D7] gi|... 39 0.074
emb|CAB97127.1| inositol 1,4,5-trisphosphate receptor-like prote... 38 0.13
ref|NP_701018.1| hypothetical protein [Plasmodium falciparum 3D7... 38 0.13
>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
pombe] gi|7493381|pir||T39903 serine-rich protein -
fission yeast (Schizosaccharomyces pombe)
gi|3873550|emb|CAA22127.1| hypothetical serine-rich
secreted protein [Schizosaccharomyces pombe]
Length = 534
Score = 38.5 bits (88), Expect(2) = 0.003
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +2
Query: 290 TTSMHSPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
++S+ S SS SSS+ + S IS S S S TSST SS SSS S ST+S
Sbjct: 269 SSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLS 322
Score = 33.9 bits (76), Expect = 1.8
Identities = 23/49 (46%), Positives = 28/49 (56%)
Frame = +2
Query: 305 SPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
S SS ++S+ + S+IS S S S TSST SS SSS S ST S
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSS 305
Score = 33.5 bits (75), Expect = 2.4
Identities = 23/53 (43%), Positives = 32/53 (59%)
Frame = +2
Query: 293 TSMHSPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
+S SPSS SSST +T SL + S S S ++S+ +SS SSS + S+ S
Sbjct: 217 SSSSSPSSSSSST-LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSS 268
Score = 33.1 bits (74), Expect = 3.1
Identities = 24/54 (44%), Positives = 28/54 (51%)
Frame = +2
Query: 290 TTSMHSPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
T+S S SS SSS+ + S IS S S SF T S+ S SSS S T S
Sbjct: 286 TSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
Score = 33.1 bits (74), Expect = 3.1
Identities = 22/54 (40%), Positives = 32/54 (58%)
Frame = +2
Query: 290 TTSMHSPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
++S + SS SSS+ I+ S S S S S I +SS+ SSP+S+ S S+ S
Sbjct: 258 SSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSS 311
Score = 31.6 bits (70), Expect = 9.1
Identities = 20/49 (40%), Positives = 27/49 (54%)
Frame = +2
Query: 305 SPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
S SS SSS + S + S S S I +SS+ SSP+S+ S S+ S
Sbjct: 246 SSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSS 294
Score = 31.6 bits (70), Expect = 9.1
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +2
Query: 290 TTSMHSPSSCSSSTKITKLSLISDSERSMHSFIQTSSTQISSPSSSKSVKSTIS 451
T+S+ S SS SSST SL S S S S +SS+ ISS SSS S ++ S
Sbjct: 237 TSSIPSTSSSSSSTSS---SLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287
Score = 23.9 bits (50), Expect(2) = 0.003
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 459 SSSYLKLGKPSPTFSIVGISQSSQTLLTGSATTE--KPDFKFMS-ISSSFKLTSQFLESS 629
SSS P+ + S + S SS + + S+TT K F S +SSS +S L SS
Sbjct: 327 SSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386
Query: 630 S 632
S
Sbjct: 387 S 387
>gb|EAA17593.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 568
Score = 40.8 bits (94), Expect = 0.015
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 55 MMKLNMITMELHKPWTHNTSQNSLKQVVQSFRTKMQVSFNNNHYINTTNTWTNNNE---- 222
++ N +E++ P N SQ+ ++ T +NNN+Y N N + NNN
Sbjct: 465 VVSYNPQILEMNIPRKLNPSQDDAP-IINMPPTSNNSIYNNNNYNNNNNNYNNNNLASNL 523
Query: 223 QNIQKHQNVTTEIHLTQLVRQINNLNALPIFMLLFN 330
NI++H+ +EI+ +N N LP ++ F+
Sbjct: 524 NNIEEHKKSESEINTNDQTENDDNKNELPNWLNQFS 559
>ref|NP_705495.1| malaria antigen [Plasmodium falciparum 3D7]
gi|23615740|emb|CAD52732.1| malaria antigen [Plasmodium
falciparum 3D7]
Length = 1792
Score = 38.5 bits (88), Expect = 0.074
Identities = 35/135 (25%), Positives = 59/135 (42%), Gaps = 20/135 (14%)
Frame = +1
Query: 64 LNMITMELHKPWTHNTSQNSLKQV----------VQSFRTKMQVSFNNNHY--------- 186
LN I M+ + T N + NS+ + +Q M V+ N N+Y
Sbjct: 293 LNNIEMKYN---TLNNNMNSINKNTNITNVGTLNIQMKNNPMNVNINQNNYNTDFYVNEN 349
Query: 187 -INTTNTWTNNNEQNIQKHQNVTTEIHLTQLVRQINNLNALPIFMLLFN*NNKVITHF*L 363
+N+ N NNN NI+K + + ++L + Q+N+ N + + N NN T+
Sbjct: 350 KVNSKNKENNNNHINIEKMNYIKSNVYLDNTLVQVNSNNNYNMDKNILNNNNN--TYIIN 407
Query: 364 RKINAFLHTNIFYTD 408
K N+ ++ NI D
Sbjct: 408 DKKNSTVNNNITNMD 422
Score = 33.9 bits (76), Expect = 1.8
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = +1
Query: 172 NNNHYINTTNTWTNNNEQNIQKHQNVTTEIHLTQLVRQINNLNALPI 312
NNN+ IN TN NNN NI N I++T I+N N PI
Sbjct: 130 NNNNNINITNISNNNNNINITNISNNNNNINIT----NISNNNKQPI 172
Score = 32.0 bits (71), Expect = 7.0
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Frame = +1
Query: 151 TKMQVSFNNNH--YINTTNTWTNNNEQNIQKHQNVTTEIHLTQLVRQINNLN 300
T+ V+F N + Y N N NNN NI N I++T + NN+N
Sbjct: 109 TRNSVNFLNKNILYGNNNNNNNNNNNINITNISNNNNNINITNISNNNNNIN 160
>emb|CAB97127.1| inositol 1,4,5-trisphosphate receptor-like protein [Dictyostelium
discoideum]
Length = 3177
Score = 37.7 bits (86), Expect = 0.13
Identities = 25/71 (35%), Positives = 37/71 (51%), Gaps = 11/71 (15%)
Frame = +1
Query: 175 NNHYINTTNTWTNNNEQNIQKHQNVTTEIHLTQLV--RQINN---------LNALPIFML 321
NN NTTN TNNN N + +T+ HL QLV +Q NN LN++P +
Sbjct: 1027 NNSTNNTTNNNTNNNNNNNNTNSLITSTTHLIQLVSPQQNNNSNNNNNNNILNSIPTSPI 1086
Query: 322 LFN*NNKVITH 354
+ + N+ ++H
Sbjct: 1087 VGSTNHGQLSH 1097
>ref|NP_701018.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496081|gb|AAN35742.1|AE014838_20 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2480
Score = 37.7 bits (86), Expect = 0.13
Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Frame = +1
Query: 37 HFSSYKMMKLNMITMELHKPWTHNTSQNSLK----------QVVQSFRTKMQVSFNNNHY 186
+F Y M + I + K + + + LK Q+ QS TK NNN+
Sbjct: 553 NFDDYMMKSFSYIERNIDKIFNCDDEKKILKKIKKRILNILQLYQSKETKNNKQSNNNN- 611
Query: 187 INTTNTWTNNNEQNIQKHQN--VTTEIHLTQLVRQINNLNALPIFMLLFN*NNKVITHF* 360
N N ++NNN N H + V+ EI T ++ ++ ++ + I K+++H
Sbjct: 612 -NNDNNYSNNNNNNSSNHHHAVVSKEIVCTHIILFVDCISNIKIPW-------KLLSH-- 661
Query: 361 LRKINAFLHTNIFYTDIFPFIIQERQINNFNMPQVLT*SLANLHQHSALLEFHSH----- 525
F + N F+ ++ + ++ + NM +++ +H +++ +++H
Sbjct: 662 ------FKNDNTFFIVVY-WKEEDDEDEENNMTNIISRQSRVIHLNNSNSYYYNHCNSIE 714
Query: 526 --HKLC*QVQQQQKNQTSN 576
+ C + Q NQT++
Sbjct: 715 VDYNSCVLEKYQTNNQTNH 733
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,742,402
Number of Sequences: 1393205
Number of extensions: 9886714
Number of successful extensions: 75587
Number of sequences better than 10.0: 296
Number of HSP's better than 10.0 without gapping: 35688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56196
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
