Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004929A_C01 KMC004929A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB81598.1| anti-pneumolysin antibody heavy chain [Mus musculus] 33 3.9
gb|AAC18412.1| immunoglobulin heavy chain variable region [Bos t... 33 5.0
>gb|AAB81598.1| anti-pneumolysin antibody heavy chain [Mus musculus]
Length = 112
Score = 33.1 bits (74), Expect = 3.9
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +1
Query: 490 RYNPKLVSKIALTK*NLSKQVLMXLNWVINED 585
RYNP L S+I++T+ + Q + LN V NED
Sbjct: 59 RYNPSLKSRISITRDSSKNQFFLHLNSVTNED 90
>gb|AAC18412.1| immunoglobulin heavy chain variable region [Bos taurus]
Length = 124
Score = 32.7 bits (73), Expect = 5.0
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 487 ARYNPKLVSKIALTK*NLSKQVLMXLNWVINED 585
ARYNP L S++++TK N QV + ++ V ED
Sbjct: 57 ARYNPTLKSRLSITKDNSKSQVSLSVSSVTTED 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,491,602
Number of Sequences: 1393205
Number of extensions: 12080675
Number of successful extensions: 29981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29899
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
