Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004926A_C01 KMC004926A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23066.1| R 3 protein [Glycine max] 54 3e-10
gb|AAO23069.1| R 4 protein [Glycine max] 51 2e-09
gb|AAO23077.1| R 8 protein [Glycine max] 54 5e-09
gb|AAM89998.1|AF403250_1 disease resistance-like protein GS0-1 [... 54 6e-09
gb|AAO23070.1| R 9 protein [Glycine max] 49 1e-08
>gb|AAO23066.1| R 3 protein [Glycine max]
Length = 897
Score = 53.9 bits (128), Expect(2) = 3e-10
Identities = 25/40 (62%), Positives = 32/40 (79%)
Frame = -3
Query: 468 FNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 349
++VFL+FRG DT HGF L K+L D+GIYTFI+D+EL R
Sbjct: 12 YDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPR 51
Score = 31.6 bits (70), Expect(2) = 3e-10
Identities = 16/27 (59%), Positives = 20/27 (73%)
Frame = -2
Query: 346 DEITPSLVKAIERTRIAIPELYQDMLS 266
DEITP+L KAI+ +RIAI L Q+ S
Sbjct: 53 DEITPALSKAIQESRIAITVLSQNYAS 79
>gb|AAO23069.1| R 4 protein [Glycine max]
Length = 895
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = -3
Query: 468 FNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 349
++VFL+FRG DT HGF L K+L D+GIYT I+D+EL R
Sbjct: 12 YDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPR 51
Score = 31.6 bits (70), Expect(2) = 2e-09
Identities = 16/27 (59%), Positives = 20/27 (73%)
Frame = -2
Query: 346 DEITPSLVKAIERTRIAIPELYQDMLS 266
DEITP+L KAI+ +RIAI L Q+ S
Sbjct: 53 DEITPALSKAIQESRIAITVLSQNYAS 79
>gb|AAO23077.1| R 8 protein [Glycine max]
Length = 892
Score = 53.5 bits (127), Expect(2) = 5e-09
Identities = 23/40 (57%), Positives = 32/40 (79%)
Frame = -3
Query: 468 FNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 349
++VFL+F G DT GF +L K+L D+GIYTFI+D+EL+R
Sbjct: 12 YDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRR 51
Score = 27.7 bits (60), Expect(2) = 5e-09
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 367 RRGASERDEITPSLVKAIERTRIAIPELYQDMLS 266
RRG DEI P+L AI+ +RIAI L Q+ S
Sbjct: 50 RRG----DEIKPALSNAIQESRIAITVLSQNYAS 79
>gb|AAM89998.1|AF403250_1 disease resistance-like protein GS0-1 [Glycine max]
gi|22037315|gb|AAM89999.1|AF403251_1 disease
resistance-like protein GS0-2 [Glycine max]
Length = 158
Score = 53.5 bits (127), Expect(2) = 6e-09
Identities = 23/40 (57%), Positives = 32/40 (79%)
Frame = -3
Query: 468 FNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQR 349
++VFL+F G DT GF +L K+L D+GIYTFI+D+EL+R
Sbjct: 12 YDVFLSFTGQDTRQGFTGYLYKALCDRGIYTFIDDQELRR 51
Score = 27.7 bits (60), Expect(2) = 6e-09
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 367 RRGASERDEITPSLVKAIERTRIAIPELYQDMLS 266
RRG DEI P+L AI+ +RIAI L Q+ S
Sbjct: 50 RRG----DEIKPALSNAIQESRIAITVLSQNYAS 79
>gb|AAO23070.1| R 9 protein [Glycine max]
Length = 264
Score = 48.9 bits (115), Expect(2) = 1e-08
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = -3
Query: 486 ASHVLTFNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEEL 355
+S ++VFLNFRG DT +GF S L ++L DKGI TF ++E+L
Sbjct: 6 SSRASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKL 49
Score = 31.2 bits (69), Expect(2) = 1e-08
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2
Query: 346 DEITPSLVKAIERTRIAIPELYQDMLS 266
+EITP+L+KAI+ +RIAI L +D S
Sbjct: 53 EEITPALLKAIKDSRIAITVLSEDFAS 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,473,303
Number of Sequences: 1393205
Number of extensions: 8056303
Number of successful extensions: 18979
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 18498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18967
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
