Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004924A_C01 KMC004924A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC08245.1| putative protein [Arabidopsis thaliana] 50 9e-06
gb|AAK25991.1|AF360281_1 unknown protein [Arabidopsis thaliana] 50 9e-06
ref|NP_568235.1| putative protein; protein id: At5g10710.1, supp... 50 9e-06
pir||F72622 hypothetical protein APE1439 - Aeropyrum pernix (str... 32 2.4
ref|NP_224301.1| CT303 hypothetical protein [Chlamydophila pneum... 32 3.2
>emb|CAC08245.1| putative protein [Arabidopsis thaliana]
Length = 230
Score = 50.4 bits (119), Expect = 9e-06
Identities = 23/40 (57%), Positives = 30/40 (74%)
Frame = -1
Query: 461 GSHPAPVRLHYAEDALRTMSLPEAYAEIVLNLPQALQQMY 342
GS PVRL +AEDA R SLPEAYAEI+ N+P ++Q++
Sbjct: 186 GSPAIPVRLPFAEDAFRIQSLPEAYAEIMPNMPNEIRQLF 225
>gb|AAK25991.1|AF360281_1 unknown protein [Arabidopsis thaliana]
Length = 312
Score = 50.4 bits (119), Expect = 9e-06
Identities = 23/40 (57%), Positives = 30/40 (74%)
Frame = -1
Query: 461 GSHPAPVRLHYAEDALRTMSLPEAYAEIVLNLPQALQQMY 342
GS PVRL +AEDA R SLPEAYAEI+ N+P ++Q++
Sbjct: 268 GSPAIPVRLPFAEDAFRIQSLPEAYAEIMPNMPNEIRQLF 307
>ref|NP_568235.1| putative protein; protein id: At5g10710.1, supported by cDNA:
gi_13430737 [Arabidopsis thaliana]
gi|26983790|gb|AAN86147.1| unknown protein [Arabidopsis
thaliana]
Length = 312
Score = 50.4 bits (119), Expect = 9e-06
Identities = 23/40 (57%), Positives = 30/40 (74%)
Frame = -1
Query: 461 GSHPAPVRLHYAEDALRTMSLPEAYAEIVLNLPQALQQMY 342
GS PVRL +AEDA R SLPEAYAEI+ N+P ++Q++
Sbjct: 268 GSPAIPVRLPFAEDAFRIQSLPEAYAEIMPNMPNEIRQLF 307
>pir||F72622 hypothetical protein APE1439 - Aeropyrum pernix (strain K1)
gi|5105122|dbj|BAA80436.1| 182aa long hypothetical
protein [Aeropyrum pernix]
Length = 182
Score = 32.3 bits (72), Expect = 2.4
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 2/53 (3%)
Frame = -3
Query: 438 PTLCRRCLTNHESARSICR--DCIKSTPGASADVSSIRPLPRASPGDSSVKIV 286
P + RRC T S+ +I C S+PG +A S++R + ASP ++ IV
Sbjct: 20 PRVLRRCSTLFTSSSTIASTMSCRPSSPGLTASTSTLRLVTPASPLEALTSIV 72
>ref|NP_224301.1| CT303 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|15835628|ref|NP_300152.1| CT303 hypothetical protein
[Chlamydophila pneumoniae J138] gi|7468080|pir||G72121
ct303 hypothetical protein - Chlamydophila pneumoniae
(strain CWL029) gi|25348700|pir||E86502 CT303
hypothetical protein [imported] - Chlamydophila
pneumoniae (strain J138) gi|4376352|gb|AAD18246.1| CT303
hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|8978466|dbj|BAA98303.1| CT303 hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 169
Score = 32.0 bits (71), Expect = 3.2
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -1
Query: 236 YYLAKLVIGMRVHFSALLSCNICIMSLVIPSIPSHVLY--HKYVRARLTSNPNSCH*SFL 63
YY +KLV G+ V +A+ IC++ PS+ S Y +Y A S SCH
Sbjct: 19 YYYSKLVFGLTVLLAAI--SVICLLGCSEPSLSSFTEYVGPEYSAAAQLSIEQSCHDEVY 76
Query: 62 HNSMYIFWGSGSQ 24
+ + W S+
Sbjct: 77 GQQVVVTWSLPSR 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,720,345
Number of Sequences: 1393205
Number of extensions: 7290961
Number of successful extensions: 16433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16428
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
