Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004923A_C01 KMC004923A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187236.1| unknown protein; protein id: At3g05850.1 [Arabi... 111 4e-24
dbj|BAB10320.1| mutator-like transposase-like protein [Arabidops... 103 1e-21
gb|AAF26998.1|AC016827_9 putative mudrA protein [Arabidopsis tha... 96 3e-19
ref|NP_187350.2| putative mudrA protein; protein id: At3g06940.1... 96 3e-19
dbj|BAA82373.1| Similar to maize transposon MuDR mudrA-like prot... 85 4e-16
>ref|NP_187236.1| unknown protein; protein id: At3g05850.1 [Arabidopsis thaliana]
gi|6714398|gb|AAF26087.1|AC012393_13 unknown protein
[Arabidopsis thaliana]
Length = 777
Score = 111 bits (278), Expect = 4e-24
Identities = 50/92 (54%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Frame = -3
Query: 505 YDYCSRYCTTESYRLTYSERVNPIPIMAVPESKDSQ--PVVTVTPPFTRRPPGRPATKRY 332
YDYCS+Y T YR TY++ +NP+P++ ++S VTVTPP TRRPPGRP K+
Sbjct: 686 YDYCSKYFTVAYYRSTYAQSINPVPLLEGEMCRESSGGSAVTVTPPPTRRPPGRPPKKKT 745
Query: 331 VSQNIVKRELHCSRCKGLGHNKSTCKE*L*SC 236
++ ++KR+L CSRCKGLGHNKSTCK+ L C
Sbjct: 746 PAEEVMKRQLQCSRCKGLGHNKSTCKDYLLEC 777
>dbj|BAB10320.1| mutator-like transposase-like protein [Arabidopsis thaliana]
gi|22531088|gb|AAM97048.1| unknown protein [Arabidopsis
thaliana] gi|23197938|gb|AAN15496.1| unknown protein
[Arabidopsis thaliana]
Length = 757
Score = 103 bits (257), Expect = 1e-21
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = -3
Query: 505 YDYCSRYCTTESYRLTYSERVNPIP----IMAVPESKDSQPVVTVTPPFTR-RPPGRPAT 341
Y+YCSRY T+ESYRLTY+E +NP+P M + E + VV+VTPP TR PPGRP +
Sbjct: 666 YEYCSRYFTSESYRLTYAESINPVPNTTMTMMILEEPPVEGVVSVTPPPTRLTPPGRPKS 725
Query: 340 KRYVSQNIVKRELHCSRCKGLGHNKSTCK 254
K+ ++ KR+L CS CKGLGHNK TCK
Sbjct: 726 KQVEPLDMFKRQLQCSNCKGLGHNKKTCK 754
>gb|AAF26998.1|AC016827_9 putative mudrA protein [Arabidopsis thaliana]
Length = 609
Score = 95.5 bits (236), Expect = 3e-19
Identities = 45/85 (52%), Positives = 58/85 (67%), Gaps = 1/85 (1%)
Frame = -3
Query: 505 YDYCSRYCTTESYRLTYSERVNPIPIMAVPESKDS-QPVVTVTPPFTRRPPGRPATKRYV 329
Y+YCS Y T ES+RL Y+E + P+P M D + +V VTPP TRR PGRP K+
Sbjct: 523 YEYCSTYLTVESHRLMYAESIQPVPNMDRMMLDDPPEGLVCVTPPPTRRTPGRPKIKKVE 582
Query: 328 SQNIVKRELHCSRCKGLGHNKSTCK 254
+++KR+L CS+CKGLGHNK TCK
Sbjct: 583 PLDMMKRQLQCSKCKGLGHNKKTCK 607
>ref|NP_187350.2| putative mudrA protein; protein id: At3g06940.1, supported by cDNA:
gi_17380907, supported by cDNA: gi_18087532, supported
by cDNA: gi_20855901 [Arabidopsis thaliana]
gi|17380908|gb|AAL36266.1| putative mudrA protein
[Arabidopsis thaliana]
gi|18087533|gb|AAL58900.1|AF462806_1 AT3g06940/F17A9_9
[Arabidopsis thaliana] gi|20855902|gb|AAM26637.1|
AT3g06940/F17A9_9 [Arabidopsis thaliana]
gi|28393919|gb|AAO42367.1| putative mudrA protein
[Arabidopsis thaliana]
Length = 749
Score = 95.5 bits (236), Expect = 3e-19
Identities = 45/85 (52%), Positives = 58/85 (67%), Gaps = 1/85 (1%)
Frame = -3
Query: 505 YDYCSRYCTTESYRLTYSERVNPIPIMAVPESKDS-QPVVTVTPPFTRRPPGRPATKRYV 329
Y+YCS Y T ES+RL Y+E + P+P M D + +V VTPP TRR PGRP K+
Sbjct: 663 YEYCSTYLTVESHRLMYAESIQPVPNMDRMMLDDPPEGLVCVTPPPTRRTPGRPKIKKVE 722
Query: 328 SQNIVKRELHCSRCKGLGHNKSTCK 254
+++KR+L CS+CKGLGHNK TCK
Sbjct: 723 PLDMMKRQLQCSKCKGLGHNKKTCK 747
>dbj|BAA82373.1| Similar to maize transposon MuDR mudrA-like protein. (AC002340)
[Oryza sativa (japonica cultivar-group)]
Length = 1096
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/86 (48%), Positives = 56/86 (64%), Gaps = 3/86 (3%)
Frame = -3
Query: 502 DYCSRYCTTESYRLTYSERVNPIP--IMAVPESKDSQ-PVVTVTPPFTRRPPGRPATKRY 332
D+C++Y TTE YRLTY+ +NPIP ++A P + SQ + +P TRR GRP K
Sbjct: 630 DFCAKYFTTECYRLTYAMSINPIPDIVVAAPSTDPSQGEALHQSPILTRRQVGRPKEKPA 689
Query: 331 VSQNIVKRELHCSRCKGLGHNKSTCK 254
+ +KR + CSRCKG GHNK+TCK
Sbjct: 690 DPRIAIKRAVRCSRCKGYGHNKATCK 715
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,938,488
Number of Sequences: 1393205
Number of extensions: 9149335
Number of successful extensions: 22608
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 21479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22526
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
