[KDRI]Lotus japonicus Consensus Sequences

KMC004922A_c01
[Fasta Sequence] [Nr Search] [EST assemble image]

>KMC004922A_C01 KMC004922A_c01
attaaaataaaattaaagttttagatgaaaaacaataattttgacaacattgtttagtct
cacgttcaaaaaaaaaacatTGTTTAGTCTCCAAAATGTCAGTGGAGCTAAATTCAAGAA
GAAACATACATTAAAGCTTGCATTTATCACATGTAGCAGGTGAAACACCGAATTAAATAC
TCCTCCTTATGCTAACCACGACACATTTATTTTCTCAGAAACTCATAATAAAAACCCACA
TTCTCAAAGCGCACAAATGATCAAATGATGCGGCGGCACAGGGTAATCCCATCACCAACG
GGGAGCTGGCAAATCTCAATCCTTGAATCATGAGCTAAATATTTGTTGAGCTCAATCACA
TAACCACGATAGTGCTTCACAAAATCCATCATAGGTGCGTCTGGTGCAGCCACCATAGAC
CCAAACCACAAGGTGTTATCGAACCCAATTAGACCCCCAACCTTCACAAGCTCAATCACC
CTCTGGTGATAGTTTATGTAGTTATCCTTATCAGCATCCACAAAAATGAAATCAAAGGTT
CCCTTATTATTTTCATCCTCTAGCAGTTCATCAAGAAGAGGAAGAGCTGGTCCTTCTCTG
AAATCAATCTTGTGAGCAACTCCAGCTTTCTCAATTATGGGTAATCCCAATTCATAGTAT
TCACGGTTCACATCCAAAGCCAAGATCTTTCCATCTTCAGGAAGAGCAAGAGCAGTGGAA
AGCAGAGAGTAACCAGTGTAGACACCAATTTCCATGGTGTTCTTGGCATTGATGAGTTTA
ATCAACATCCTCAATAGTTGTCCTTCATCAGGTGGTGTAGCCATCAGGTTCCGAGGGTGT
TTTTCTGTCATCTCACGAAGCTCCTTCAAGCTTTCATGCTCTCTGGGAAACACACTGGTT
TCAAGTATATACTGATAGAGTGCATCACTCTGAAGGAGACTCTTatgagctagatcttgg
tggccgatgagttgattttgctgttgttcctctccgttattgcgccatgttctctgttga
tttt

Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004922A_C01 KMC004922A_c01
         (1024 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195131.1| caffeoyl-CoA 3-O-methyltransferase; protein id:...   395  e-109
gb|AAM66108.1| caffeoyl-CoA O-methyltransferase-like protein [Ar...   392  e-108
pir||T02920 caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) NTCC...   384  e-105
pir||T04084 caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) 5 - ...   384  e-105
sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase (Trans-caf...   383  e-105

>ref|NP_195131.1| caffeoyl-CoA 3-O-methyltransferase; protein id: At4g34050.1,
            supported by cDNA: 8049., supported by cDNA: gi_15982892,
            supported by cDNA: gi_17065107, supported by cDNA:
            gi_20148256 [Arabidopsis thaliana] gi|7448240|pir||T05431
            probable caffeoyl-CoA O-methyltransferase (EC 2.1.1.104)
            F28A23.190 - Arabidopsis thaliana
            gi|2911057|emb|CAA17567.1| caffeoyl-CoA
            O-methyltransferase-like protein [Arabidopsis thaliana]
            gi|7270354|emb|CAB80122.1| caffeoyl-CoA
            O-methyltransferase-like protein [Arabidopsis thaliana]
            gi|15982893|gb|AAL09793.1| AT4g34050/F28A23_190
            [Arabidopsis thaliana] gi|17065108|gb|AAL32708.1|
            Phosphoglycerate dehydrogenase - like protein
            [Arabidopsis thaliana] gi|20148257|gb|AAM10019.1|
            phosphoglycerate dehydrogenase-like protein [Arabidopsis
            thaliana] gi|23506117|gb|AAN28918.1| At4g34050/F28A23_190
            [Arabidopsis thaliana]
          Length = 259

 Score =  395 bits (1015), Expect = e-109
 Identities = 190/249 (76%), Positives = 221/249 (88%)
 Frame = -3

Query: 1013 RTWRNNGEEQQQNQLIGHQDLAHKSLLQSDALYQYILETSVFPREHESLKELREMTEKHP 834
            +T   NGE+Q+Q+Q + HQ++ HKSLLQSD LYQYILETSV+PRE ES+KELRE+T KHP
Sbjct: 10   KTSSTNGEDQKQSQNLRHQEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHP 69

Query: 833  RNLMATPPDEGQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYY 654
             N+M T  DEGQ L MLIKL+NAKNTMEIGVYTGYSLL+TALALPEDGKILA+DVNRE Y
Sbjct: 70   WNIMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENY 129

Query: 653  ELGLPIIEKAGVAHKIDFREGPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHQRVI 474
            ELGLPIIEKAGVAHKIDFREGPALP+LDE++ DE N GT+DFIFVDADKDNYINYH+R+I
Sbjct: 130  ELGLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLI 189

Query: 473  ELVKVGGLIGFDNTLWFGSMVAAPDAPMMDFVKHYRGYVIELNKYLAHDSRIEICQLPVG 294
            +LVK+GG+IG+DNTLW GS+VA PDAPM  +V++YR +V+ELNK LA D RIEIC LPVG
Sbjct: 190  DLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVG 249

Query: 293  DGITLCRRI 267
            DGIT+CRRI
Sbjct: 250  DGITICRRI 258

>gb|AAM66108.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana]
          Length = 259

 Score =  392 bits (1008), Expect = e-108
 Identities = 189/249 (75%), Positives = 220/249 (87%)
 Frame = -3

Query: 1013 RTWRNNGEEQQQNQLIGHQDLAHKSLLQSDALYQYILETSVFPREHESLKELREMTEKHP 834
            +T   NGE+Q+Q+Q + HQ++ HKSLLQSD LYQYILETSV+PRE ES+KELRE+T KHP
Sbjct: 10   KTSSTNGEDQKQSQNLRHQEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHP 69

Query: 833  RNLMATPPDEGQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYY 654
             N+M T  DEGQ L MLIKL+NAKNTMEIGVYTGYSLL+TALALPEDGKILA+DVNRE Y
Sbjct: 70   WNIMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENY 129

Query: 653  ELGLPIIEKAGVAHKIDFREGPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHQRVI 474
            ELGLPIIEKAGVAHKIDFREGPALP+LDE++ DE N GT+DFIFVDADKD YINYH+R+I
Sbjct: 130  ELGLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDXYINYHKRLI 189

Query: 473  ELVKVGGLIGFDNTLWFGSMVAAPDAPMMDFVKHYRGYVIELNKYLAHDSRIEICQLPVG 294
            +LVK+GG+IG+DNTLW GS+VA PDAPM  +V++YR +V+ELNK LA D RIEIC LPVG
Sbjct: 190  DLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVG 249

Query: 293  DGITLCRRI 267
            DGIT+CRRI
Sbjct: 250  DGITICRRI 258

>pir||T02920 caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) NTCCOAOMT - common
           tobacco gi|1103487|emb|CAA91228.1| caffeoyl-CoA
           O-methyltransferase [Nicotiana tabacum]
          Length = 247

 Score =  384 bits (986), Expect = e-105
 Identities = 184/239 (76%), Positives = 214/239 (88%)
 Frame = -3

Query: 983 QQNQLIGHQDLAHKSLLQSDALYQYILETSVFPREHESLKELREMTEKHPRNLMATPPDE 804
           Q+NQ+  HQ++ HKSLLQSDALYQYILETSV+PRE E +KELRE+T KHP NLM T  DE
Sbjct: 8   QENQVTKHQEVGHKSLLQSDALYQYILETSVYPREPEPMKELRELTAKHPWNLMTTSADE 67

Query: 803 GQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYYELGLPIIEKA 624
           GQ L ML+KLI AKNTMEIGVYTGYSLL+TALALP+DGKILA+D+N+E YELGLP+I+KA
Sbjct: 68  GQFLSMLLKLIIAKNTMEIGVYTGYSLLATALALPDDGKILAMDINKENYELGLPVIQKA 127

Query: 623 GVAHKIDFREGPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHQRVIELVKVGGLIG 444
           GVAHKIDFREGPALP+LD ++ED+NN GT+DFIFVDADKDNYINYH+R+IELVKVGG+IG
Sbjct: 128 GVAHKIDFREGPALPVLDLMIEDKNNHGTYDFIFVDADKDNYINYHKRIIELVKVGGVIG 187

Query: 443 FDNTLWFGSMVAAPDAPMMDFVKHYRGYVIELNKYLAHDSRIEICQLPVGDGITLCRRI 267
           +DNTLW GS+VA PDAPM  +V++YR +V+ELNK LA D RIEIC LPVGDGITLCRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

>pir||T04084 caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) 5 - common tobacco
           gi|1679853|emb|CAB05369.1| caffeoyl-CoA
           O-methyltransferase 5 [Nicotiana tabacum]
          Length = 240

 Score =  384 bits (985), Expect = e-105
 Identities = 184/234 (78%), Positives = 212/234 (89%)
 Frame = -3

Query: 968 IGHQDLAHKSLLQSDALYQYILETSVFPREHESLKELREMTEKHPRNLMATPPDEGQLLR 789
           I HQ++ HKSLLQSDALYQYILETSV+PRE ES+KELRE+T KHP NLM T  DEGQ L 
Sbjct: 6   IKHQEVGHKSLLQSDALYQYILETSVYPREPESMKELREVTAKHPWNLMTTSADEGQFLN 65

Query: 788 MLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYYELGLPIIEKAGVAHK 609
           ML+KLINAKNTMEIGVYTGYSLL+TALA+P+DGKILA+D+NRE YE+GLPIIEKAGVAHK
Sbjct: 66  MLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIGLPIIEKAGVAHK 125

Query: 608 IDFREGPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHQRVIELVKVGGLIGFDNTL 429
           I+FREGPALP+LD+L+ED+ N GT+DFIFVDADKDNYINYH+R+I+LVKVGGLIG+DNTL
Sbjct: 126 IEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIGYDNTL 185

Query: 428 WFGSMVAAPDAPMMDFVKHYRGYVIELNKYLAHDSRIEICQLPVGDGITLCRRI 267
           W GS+VA PDAPM  +V++YR +V+ELNK LA D RIEIC LPVGDGITLCRRI
Sbjct: 186 WNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 239

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase (Trans-caffeoyl-CoA
           3-O-methyltransferase) (CCOAMT) (CCOAOMT)
           gi|7448258|pir||T09757 caffeoyl-CoA O-methyltransferase
           (EC 2.1.1.104) - quaking aspen gi|857578|gb|AAA80651.1|
           caffeoyl-CoA 3-O-methyltransferase
          Length = 247

 Score =  383 bits (984), Expect = e-105
 Identities = 186/244 (76%), Positives = 216/244 (88%)
 Frame = -3

Query: 998 NGEEQQQNQLIGHQDLAHKSLLQSDALYQYILETSVFPREHESLKELREMTEKHPRNLMA 819
           NGEEQQ +Q   HQ++ HKSLLQSDALYQYILETSV+PRE E +KELRE+T KHP N+M 
Sbjct: 4   NGEEQQ-SQAGRHQEVGHKSLLQSDALYQYILETSVYPREPECMKELREVTAKHPWNIMT 62

Query: 818 TPPDEGQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYYELGLP 639
           T  DEGQ L ML+KL+NAKNTMEIGVYTGYSLL+TALA+PEDGKILA+D+NRE YELGLP
Sbjct: 63  TSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLP 122

Query: 638 IIEKAGVAHKIDFREGPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHQRVIELVKV 459
           +I+KAGVAHKIDF+EGPALP+LD+++ED    G+FDFIFVDADKDNYINYH+R+IELVKV
Sbjct: 123 VIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKV 182

Query: 458 GGLIGFDNTLWFGSMVAAPDAPMMDFVKHYRGYVIELNKYLAHDSRIEICQLPVGDGITL 279
           GGLIG+DNTLW GS+VA PDAPM  +V++YR +V+ELNK LA D RIEIC LPVGDGITL
Sbjct: 183 GGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 242

Query: 278 CRRI 267
           CRRI
Sbjct: 243 CRRI 246

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 882,042,324
Number of Sequences: 1393205
Number of extensions: 20267451
Number of successful extensions: 54678
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 51395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54363
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59601274632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

	clone	accession	position
1	MWM071f11_f	AV765847	1	332
2	SPD078e10_f	BP050247	86	595
3	MRL024d11_f	BP084954	143	484
4	MPD011e05_f	AV770739	502	1024

Lotus japonicus
Kazusa DNA Research Institute