>KMC004918A_C01 KMC004918A_c01
gtctgttggcatcacatgattaacgattatccaTTCTCTAGCATCAAAATGGAGTTAAGA
GTAAGCTCCACATAACACTTGAACATCAAATAAGGGAACAAAGAGCAAAAATCTTCATAC
TTAAAAATCCTTATAAGAAATAACATGAAAAGTGCCTTCACGGGATTTCAGAAGTAAACA
CCAGAAAAGAAATACTACGGCATCAAACTTTGAATCCTCGACGGTGTCCTCTTTCCTCTA
GCCATCTCAAACTTCCTTCCCTTGGATCGCACATAAGGGTGGGGGTGGCTGTGTGGCACA
CCAGGAGCACGACCAACGCGCCTCACAGCCTCACGAGCATCCTTAGGGCCTCTAAGAAGG
ACCGGGCCCGTGTCCAGAGGAGCTGCAAGAGCCAACGGATCAAATGTCAAGCATTCACCA
CCGGCCTTTTCTATTCTGGCCCGTGCTGTCTCAGTAAACCTAAGAGCGGTAACCTTCAAG
G

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004918A_C01 KMC004918A_c01
         (481 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK70908.1|AC087551_7 cytoplasmic ribosomal protein L18 [Oryz...   135  3e-31
ref|NP_187210.1| putative 60S ribosomal protein L18; protein id:...   133  9e-31
gb|AAA69928.1| cytoplasmic ribosomal protein L18                      133  9e-31
sp|O65729|RL18_CICAR 60S RIBOSOMAL PROTEIN L18 gi|3021348|emb|CA...   130  7e-30
ref|NP_198137.1| 60S ribosomal protein - like; protein id: At5g2...   130  1e-29

>gb|AAK70908.1|AC087551_7 cytoplasmic ribosomal protein L18 [Oryza sativa]
          Length = 188

 Score =  135 bits (339), Expect = 3e-31
 Identities = 67/84 (79%), Positives = 71/84 (83%)
 Frame = -3

Query: 479 LKVTALRFTETARARIEKAGGECLTFDPLALAAPLDTGPVLLRGPKDAREAVRRVGRAPG 300
           +KVTALRFTETARARI  AGGECLTFD LAL APL    VLLRGPK+AREAVR  G+APG
Sbjct: 98  MKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPG 157

Query: 299 VPHSHPHPYVRSKGRKFEMARGKR 228
           VPHSH  PYVRSKGRKFE ARG+R
Sbjct: 158 VPHSHTKPYVRSKGRKFEKARGRR 181

>ref|NP_187210.1| putative 60S ribosomal protein L18; protein id: At3g05590.1,
           supported by cDNA: gi_14335089, supported by cDNA:
           gi_16974508, supported by cDNA: gi_606969 [Arabidopsis
           thaliana] gi|21431838|sp|P42791|RL18_ARATH 60S ribosomal
           protein L18 gi|6714451|gb|AAF26138.1|AC011620_14
           putative 60S ribosomal protein L18 [Arabidopsis
           thaliana] gi|14335090|gb|AAK59824.1| AT3g05590/F18C1_14
           [Arabidopsis thaliana] gi|16974509|gb|AAL31164.1|
           AT3g05590/F18C1_14 [Arabidopsis thaliana]
          Length = 187

 Score =  133 bits (335), Expect = 9e-31
 Identities = 66/84 (78%), Positives = 71/84 (83%)
 Frame = -3

Query: 479 LKVTALRFTETARARIEKAGGECLTFDPLALAAPLDTGPVLLRGPKDAREAVRRVGRAPG 300
           +KVTALRFTE ARARIEKAGGECLTFD LAL APL    VLLRGPK++REAV+  G APG
Sbjct: 97  MKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPG 156

Query: 299 VPHSHPHPYVRSKGRKFEMARGKR 228
           VPHSH  PYVR+KGRKFE ARGKR
Sbjct: 157 VPHSHSKPYVRAKGRKFEKARGKR 180

>gb|AAA69928.1| cytoplasmic ribosomal protein L18
          Length = 187

 Score =  133 bits (335), Expect = 9e-31
 Identities = 66/84 (78%), Positives = 71/84 (83%)
 Frame = -3

Query: 479 LKVTALRFTETARARIEKAGGECLTFDPLALAAPLDTGPVLLRGPKDAREAVRRVGRAPG 300
           +KVTALRFTE ARARIEKAGGECLTFD LAL APL    VLLRGPK++REAV+  G APG
Sbjct: 97  MKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPG 156

Query: 299 VPHSHPHPYVRSKGRKFEMARGKR 228
           VPHSH  PYVR+KGRKFE ARGKR
Sbjct: 157 VPHSHSKPYVRAKGRKFEKARGKR 180

>sp|O65729|RL18_CICAR 60S RIBOSOMAL PROTEIN L18 gi|3021348|emb|CAA06246.1| ribosomal
           protein L18 [Cicer arietinum]
          Length = 183

 Score =  130 bits (327), Expect = 7e-30
 Identities = 66/84 (78%), Positives = 72/84 (85%)
 Frame = -3

Query: 479 LKVTALRFTETARARIEKAGGECLTFDPLALAAPLDTGPVLLRGPKDAREAVRRVGRAPG 300
           +KVTAL+FTETARARI+KAGGECLTFD LAL  PL T  VLLRGPK+AREAV+  G APG
Sbjct: 94  IKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPG 152

Query: 299 VPHSHPHPYVRSKGRKFEMARGKR 228
           VPHSH  PYVRSKGRKFE ARG+R
Sbjct: 153 VPHSHTKPYVRSKGRKFEKARGRR 176

>ref|NP_198137.1| 60S ribosomal protein - like; protein id: At5g27850.1, supported by
           cDNA: gi_15810152 [Arabidopsis thaliana]
           gi|15810153|gb|AAL07220.1| putative 60S ribosomal
           protein [Arabidopsis thaliana]
           gi|21689771|gb|AAM67529.1| putative 60S ribosomal
           protein [Arabidopsis thaliana]
           gi|23397141|gb|AAN31854.1| putative 60S ribosomal
           protein [Arabidopsis thaliana]
          Length = 187

 Score =  130 bits (326), Expect = 1e-29
 Identities = 65/84 (77%), Positives = 70/84 (82%)
 Frame = -3

Query: 479 LKVTALRFTETARARIEKAGGECLTFDPLALAAPLDTGPVLLRGPKDAREAVRRVGRAPG 300
           +KVTALRFTE ARARIEKAGGECLTFD LAL APL    VLLRGPK++REAV+  G APG
Sbjct: 97  MKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPG 156

Query: 299 VPHSHPHPYVRSKGRKFEMARGKR 228
           VPHS+  PYVR KGRKFE ARGKR
Sbjct: 157 VPHSNTKPYVRHKGRKFEKARGKR 180

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,881,220
Number of Sequences: 1393205
Number of extensions: 9231242
Number of successful extensions: 27600
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 26418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27536
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPD062d02_f AV774133 1 481 2 MRL022f06_f BP084860 34 363

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