Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004917A_C01 KMC004917A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177374.1| leucine-rich repeat transmembrane protein kinas... 176 2e-43
dbj|BAC00995.1| phytosulfokine receptor [Daucus carota] 144 9e-34
ref|NP_178330.1| leucine-rich repeat transmembrane protein kinas... 135 4e-31
gb|AAM15093.1| putative receptor-like protein kinase [Arabidopsi... 135 4e-31
dbj|BAC20742.1| contains ESTs AU056601(S20723),AU056602(S20723)~... 134 5e-31
>ref|NP_177374.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g72300.1, supported by cDNA: gi_19423987
[Arabidopsis thaliana] gi|25406161|pir||G96746
hypothetical protein T9N14.20 [imported] - Arabidopsis
thaliana gi|12323670|gb|AAG51803.1|AC067754_19
leucine-rich receptor-like protein kinase, putative;
84911-81624 [Arabidopsis thaliana]
gi|19423988|gb|AAL87278.1| putative leucine-rich receptor
protein kinase [Arabidopsis thaliana]
gi|22136976|gb|AAM91717.1| putative leucine-rich receptor
protein kinase [Arabidopsis thaliana]
Length = 1095
Score = 176 bits (446), Expect = 2e-43
Identities = 78/119 (65%), Positives = 102/119 (85%)
Frame = -3
Query: 541 LGYIPPEYGQAWMATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGK 362
LGYIPPEYGQAW+ATLRGDVYSFGVV+LELLTG+RP++V +PKM+RELV WV M+ +GK
Sbjct: 969 LGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPMEVFRPKMSRELVAWVHTMKRDGK 1028
Query: 361 QDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNVGSSNPQGNKD 185
++VFD+ +R G E ML+VLD+ACMCVNQNP+KRP+I++VV+WLKN+ + Q N++
Sbjct: 1029 PEEVFDTLLRESGNEEAMLRVLDIACMCVNQNPMKRPNIQQVVDWLKNIEAEKNQNNRE 1087
>dbj|BAC00995.1| phytosulfokine receptor [Daucus carota]
Length = 1021
Score = 144 bits (362), Expect = 9e-34
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = -3
Query: 541 LGYIPPEYGQAWMATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGK 362
LGYIPPEYGQA +AT +GDVYSFGVVLLELLTGRRP+DV KP+ +R+L+ WV QM+ E +
Sbjct: 909 LGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRPMDVCKPRGSRDLISWVLQMKTEKR 968
Query: 361 QDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNVGSSN 203
+ ++FD FI K EML VL++AC C+ +NP RP+ +++V WL+N+ S+
Sbjct: 969 ESEIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRPTTQQLVSWLENIDVSS 1021
>ref|NP_178330.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g02220.1 [Arabidopsis thaliana]
gi|25410976|pir||D84434 probable receptor-like protein
kinase [imported] - Arabidopsis thaliana
Length = 1008
Score = 135 bits (339), Expect = 4e-31
Identities = 61/109 (55%), Positives = 85/109 (77%)
Frame = -3
Query: 541 LGYIPPEYGQAWMATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGK 362
LGYIPPEYGQA +AT +GDVYSFGVVLLELLT +RPVD+ KPK R+L+ WV +M+ E +
Sbjct: 900 LGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCKPKGCRDLISWVVKMKHESR 959
Query: 361 QDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNV 215
+VFD I K + EM +VL++AC+C+++NP +RP+ +++V WL +V
Sbjct: 960 ASEVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQQLVSWLDDV 1008
>gb|AAM15093.1| putative receptor-like protein kinase [Arabidopsis thaliana]
Length = 719
Score = 135 bits (339), Expect = 4e-31
Identities = 61/109 (55%), Positives = 85/109 (77%)
Frame = -3
Query: 541 LGYIPPEYGQAWMATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGK 362
LGYIPPEYGQA +AT +GDVYSFGVVLLELLT +RPVD+ KPK R+L+ WV +M+ E +
Sbjct: 611 LGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCKPKGCRDLISWVVKMKHESR 670
Query: 361 QDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNV 215
+VFD I K + EM +VL++AC+C+++NP +RP+ +++V WL +V
Sbjct: 671 ASEVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQQLVSWLDDV 719
>dbj|BAC20742.1| contains ESTs AU056601(S20723),AU056602(S20723)~receptor protein
kinase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1010
Score = 134 bits (338), Expect = 5e-31
Identities = 64/109 (58%), Positives = 85/109 (77%)
Frame = -3
Query: 541 LGYIPPEYGQAWMATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGK 362
LGYIPPEY Q+ +AT +GDVYSFGVVLLELLTGRRP+DVSK K +R+LV +V QM+ E K
Sbjct: 902 LGYIPPEYSQSVIATPKGDVYSFGVVLLELLTGRRPMDVSKAKGSRDLVSYVLQMKSEKK 961
Query: 361 QDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNV 215
++Q+FD+ I K E ++ VL+ AC C++ +P +RPSI +VV WL +V
Sbjct: 962 EEQIFDTLIWSKTHEKQLFSVLEAACRCISTDPRQRPSIEQVVAWLDSV 1010
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,540,376
Number of Sequences: 1393205
Number of extensions: 9914079
Number of successful extensions: 29945
Number of sequences better than 10.0: 2146
Number of HSP's better than 10.0 without gapping: 27852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28971
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
