Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004915A_C01 KMC004915A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566301.1| expressed protein; protein id: At3g07210.1, sup... 90 9e-18
dbj|BAB86139.1| P0413C03.14 [Oryza sativa (japonica cultivar-gro... 80 1e-14
ref|NP_493042.1| Predicted CDS, putative nuclear protein family ... 33 1.4
ref|XP_114481.3| similar to hypothetical protein [Macaca fascicu... 32 2.3
gb|AAH43435.1| Unknown (protein for IMAGE:5296336) [Homo sapiens] 32 2.3
>ref|NP_566301.1| expressed protein; protein id: At3g07210.1, supported by cDNA:
23826., supported by cDNA: gi_14334613, supported by
cDNA: gi_18491190 [Arabidopsis thaliana]
gi|6642644|gb|AAF20225.1|AC012395_12 hypothetical
protein [Arabidopsis thaliana]
gi|14334614|gb|AAK59485.1| unknown protein [Arabidopsis
thaliana] gi|18491191|gb|AAL69498.1| unknown protein
[Arabidopsis thaliana] gi|21592441|gb|AAM64392.1|
unknown [Arabidopsis thaliana]
Length = 547
Score = 90.1 bits (222), Expect = 9e-18
Identities = 59/106 (55%), Positives = 69/106 (64%), Gaps = 8/106 (7%)
Frame = -3
Query: 454 PRELKFR--QVGRSQSCVSYDRWGATQRSQVARGMTVETQRSFMRVKKMYSQGATSQRSN 281
PR+ +F +VGRSQSCVS RWG Q+S R +E QRSF+ KKM+SQGA SQRS
Sbjct: 448 PRKSEFHHERVGRSQSCVSSSRWGTPQKSLNGRREMLEKQRSFVHGKKMHSQGAMSQRS- 506
Query: 280 NDFLSPTVSSIMKR--NSSEH----PIPNRSRQTVLHSSPSPRWMF 161
ND+ SPTVSSIMK+ NSSE P+P R R S SPRW F
Sbjct: 507 NDYYSPTVSSIMKKRINSSEQQIIKPVP-RPRAV----SSSPRWAF 547
>dbj|BAB86139.1| P0413C03.14 [Oryza sativa (japonica cultivar-group)]
Length = 592
Score = 80.1 bits (196), Expect = 1e-14
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = -3
Query: 454 PRELKFRQVGRSQSCVSYDRWGATQRSQVARGMTVETQRSFMRVKKMYSQGATSQRSNND 275
PRE + VGRSQSCV+Y RW + + S + G T+ Q + + V+K +SQ + + ++D
Sbjct: 500 PRE---KHVGRSQSCVTYRRWSSPRMSTIQNG-TLRKQHTLVPVRKSHSQNTSLPQRSHD 555
Query: 274 FLSPTVSSIM-KRNSSEHPIPNRSRQTVLHSSPSPRWMF 161
+LSPTVSS M KRNS E +P + R+++ + SP+WMF
Sbjct: 556 YLSPTVSSAMKKRNSMEQQLPTKPRRSI--AQTSPKWMF 592
>ref|NP_493042.1| Predicted CDS, putative nuclear protein family member, nematode
specific [Caenorhabditis elegans] gi|7510142|pir||T27123
hypothetical protein Y53C10A.10 - Caenorhabditis elegans
gi|3947657|emb|CAA22144.1| Hypothetical protein
Y53C10A.10 [Caenorhabditis elegans]
Length = 627
Score = 33.1 bits (74), Expect = 1.4
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = -3
Query: 433 QVGRSQSCVSYDRWGATQRSQVARGMTVETQRSFMRVKKMYSQGATSQRSNNDFLSPTVS 254
QV S +Y R + + ++ + + +K + A R F +P ++
Sbjct: 126 QVQNSDDLEAYTRSDDKSSTASSGPKPIKANHTNLSAQKSFKSKAIPSRRRQFFSAP-IN 184
Query: 253 SIMKRNSSEHPIPNRSRQTVL 191
S +RN S HP PN+ T L
Sbjct: 185 SSARRNKSRHPAPNKKNFTAL 205
>ref|XP_114481.3| similar to hypothetical protein [Macaca fascicularis] [Homo
sapiens]
Length = 263
Score = 32.3 bits (72), Expect = 2.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 335 APLSFHCHPASNLAPLCSTPSIVTNTTLAS 424
+P SFH P + LAPL S PS V T++ S
Sbjct: 142 SPTSFHVSPRAPLAPLASMPSSVPKTSVES 171
>gb|AAH43435.1| Unknown (protein for IMAGE:5296336) [Homo sapiens]
Length = 350
Score = 32.3 bits (72), Expect = 2.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 335 APLSFHCHPASNLAPLCSTPSIVTNTTLAS 424
+P SFH P + LAPL S PS V T++ S
Sbjct: 153 SPTSFHVSPRAPLAPLASMPSSVPKTSVES 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,866,646
Number of Sequences: 1393205
Number of extensions: 7809610
Number of successful extensions: 22917
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22863
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
