Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004914A_C01 KMC004914A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09767.1| AT5g03040/F15A17_70 [Arabidopsis thaliana] gi|235... 67 2e-10
pir||T48325 hypothetical protein F15A17.70 - Arabidopsis thalian... 67 2e-10
ref|NP_190797.1| unknown protein; protein id: At3g52290.1 [Arabi... 58 7e-08
ref|NP_567191.1| hypothetical protein; protein id: At4g00820.1 [... 44 9e-04
ref|NP_563618.1| expressed protein; protein id: At1g01110.1, sup... 43 0.002
>gb|AAL09767.1| AT5g03040/F15A17_70 [Arabidopsis thaliana]
gi|23506103|gb|AAN28911.1| At5g03040/F15A17_70
[Arabidopsis thaliana]
Length = 461
Score = 66.6 bits (161), Expect = 2e-10
Identities = 40/76 (52%), Positives = 51/76 (66%), Gaps = 5/76 (6%)
Frame = -1
Query: 513 VPSYMVPTKSAKAKSRMQSPLAAENGTPKKGGF---GTAKKRISFPASPA--RPRRHSGP 349
+PSYMVPTKSA+A+ + QSPL T + GF +AKKR+S+P SPA +PRR S P
Sbjct: 388 LPSYMVPTKSARARLKPQSPLGGT--TQENEGFTDKASAKKRLSYPTSPALPKPRRFSAP 445
Query: 348 PKVDSSLNAEITVGNG 301
PKV+S +TV NG
Sbjct: 446 PKVES---GGVTVTNG 458
>pir||T48325 hypothetical protein F15A17.70 - Arabidopsis thaliana
gi|7413581|emb|CAB86071.1| putative protein [Arabidopsis
thaliana]
Length = 445
Score = 66.6 bits (161), Expect = 2e-10
Identities = 40/76 (52%), Positives = 51/76 (66%), Gaps = 5/76 (6%)
Frame = -1
Query: 513 VPSYMVPTKSAKAKSRMQSPLAAENGTPKKGGF---GTAKKRISFPASPA--RPRRHSGP 349
+PSYMVPTKSA+A+ + QSPL T + GF +AKKR+S+P SPA +PRR S P
Sbjct: 372 LPSYMVPTKSARARLKPQSPLGGT--TQENEGFTDKASAKKRLSYPTSPALPKPRRFSAP 429
Query: 348 PKVDSSLNAEITVGNG 301
PKV+S +TV NG
Sbjct: 430 PKVES---GGVTVTNG 442
>ref|NP_190797.1| unknown protein; protein id: At3g52290.1 [Arabidopsis thaliana]
gi|11292165|pir||T46099 hypothetical protein T25B15.60 -
Arabidopsis thaliana gi|10045562|emb|CAC07920.1|
putative protein [Arabidopsis thaliana]
gi|27754608|gb|AAO22750.1| unknown protein [Arabidopsis
thaliana] gi|28973469|gb|AAO64059.1| unknown protein
[Arabidopsis thaliana]
Length = 430
Score = 57.8 bits (138), Expect = 7e-08
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Frame = -1
Query: 513 VPSYMVPTKSAKAKSRMQ--SPLAAENGTPKKGGFGTAKKRISFPASPARPRRHSGPPKV 340
VP YM PT++AKA++R SPL++E TAKKR+SF SP RR SGPPK+
Sbjct: 368 VPGYMAPTQAAKARARFSNLSPLSSEK---------TAKKRLSFSGSPKTVRRFSGPPKL 418
Query: 339 DSSLNAEIT 313
+S++ + T
Sbjct: 419 ESNVTKKDT 427
>ref|NP_567191.1| hypothetical protein; protein id: At4g00820.1 [Arabidopsis
thaliana] gi|7485283|pir||T01564 hypothetical protein
A_TM018A10.13 - Arabidopsis thaliana
gi|2252860|gb|AAB62858.1| A_TM018A10.13 gene product
[Arabidopsis thaliana] gi|7267421|emb|CAB80891.1|
similarity to [Arabidopsis thaliana]
Length = 496
Score = 44.3 bits (103), Expect = 9e-04
Identities = 21/48 (43%), Positives = 30/48 (61%)
Frame = -1
Query: 519 SVVPSYMVPTKSAKAKSRMQSPLAAENGTPKKGGFGTAKKRISFPASP 376
+ +P+YM T+SAKA+ R QS TP+K +A+KR+SFP P
Sbjct: 390 AALPNYMAITESAKARIRSQSAPRQRPSTPEKERISSARKRLSFPVPP 437
>ref|NP_563618.1| expressed protein; protein id: At1g01110.1, supported by cDNA:
148018. [Arabidopsis thaliana]
Length = 364
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/48 (41%), Positives = 29/48 (59%)
Frame = -1
Query: 519 SVVPSYMVPTKSAKAKSRMQSPLAAENGTPKKGGFGTAKKRISFPASP 376
S++P+YM T+SAKA+ R S TP++ G KKR+S+P P
Sbjct: 259 SLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPP 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,691,955
Number of Sequences: 1393205
Number of extensions: 11246109
Number of successful extensions: 32331
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 29927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31851
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
