Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004913A_C01 KMC004913A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG27593.2| SMC2-like condensin [Arabidopsis thaliana] gi|142... 87 8e-29
ref|NP_201047.1| chromosomal protein - like; protein id: At5g624... 87 8e-29
gb|AAG53093.1|AF306547_1 SMC2-1 [Arabidopsis thaliana] 87 8e-29
emb|CAD59410.1| SMC2 protein [Oryza sativa] 88 2e-28
ref|NP_190330.1| chromosome assembly protein homolog; protein id... 86 5e-27
>gb|AAG27593.2| SMC2-like condensin [Arabidopsis thaliana]
gi|14279543|gb|AAK58634.1|AF271731_1 SMC2-like condensin
[Arabidopsis thaliana]
Length = 1177
Score = 86.7 bits (213), Expect(2) = 8e-29
Identities = 41/43 (95%), Positives = 43/43 (99%)
Frame = -3
Query: 491 LLFKPAPLYILDEVDAALDLSHTRNIGRMIKAHFPHSQFIVVS 363
LLFKPAPLYILDEVDAALDLSHT+NIGRMI+AHFPHSQFIVVS
Sbjct: 1102 LLFKPAPLYILDEVDAALDLSHTQNIGRMIRAHFPHSQFIVVS 1144
Score = 61.6 bits (148), Expect(2) = 8e-29
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 361 LKEGMFNNANVLFRTKFVDGVSTVQRTVATKQNK 260
LKEGMFNNANVLFRTKFVDGVSTVQRTV TKQ K
Sbjct: 1145 LKEGMFNNANVLFRTKFVDGVSTVQRTV-TKQTK 1177
>ref|NP_201047.1| chromosomal protein - like; protein id: At5g62410.1, supported by
cDNA: gi_12382275, supported by cDNA: gi_14279542
[Arabidopsis thaliana]
Length = 1175
Score = 86.7 bits (213), Expect(2) = 8e-29
Identities = 41/43 (95%), Positives = 43/43 (99%)
Frame = -3
Query: 491 LLFKPAPLYILDEVDAALDLSHTRNIGRMIKAHFPHSQFIVVS 363
LLFKPAPLYILDEVDAALDLSHT+NIGRMI+AHFPHSQFIVVS
Sbjct: 1100 LLFKPAPLYILDEVDAALDLSHTQNIGRMIRAHFPHSQFIVVS 1142
Score = 61.6 bits (148), Expect(2) = 8e-29
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 361 LKEGMFNNANVLFRTKFVDGVSTVQRTVATKQNK 260
LKEGMFNNANVLFRTKFVDGVSTVQRTV TKQ K
Sbjct: 1143 LKEGMFNNANVLFRTKFVDGVSTVQRTV-TKQTK 1175
>gb|AAG53093.1|AF306547_1 SMC2-1 [Arabidopsis thaliana]
Length = 1175
Score = 86.7 bits (213), Expect(2) = 8e-29
Identities = 41/43 (95%), Positives = 43/43 (99%)
Frame = -3
Query: 491 LLFKPAPLYILDEVDAALDLSHTRNIGRMIKAHFPHSQFIVVS 363
LLFKPAPLYILDEVDAALDLSHT+NIGRMI+AHFPHSQFIVVS
Sbjct: 1100 LLFKPAPLYILDEVDAALDLSHTQNIGRMIRAHFPHSQFIVVS 1142
Score = 61.6 bits (148), Expect(2) = 8e-29
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 361 LKEGMFNNANVLFRTKFVDGVSTVQRTVATKQNK 260
LKEGMFNNANVLFRTKFVDGVSTVQRTV TKQ K
Sbjct: 1143 LKEGMFNNANVLFRTKFVDGVSTVQRTV-TKQTK 1175
>emb|CAD59410.1| SMC2 protein [Oryza sativa]
Length = 1175
Score = 87.8 bits (216), Expect(2) = 2e-28
Identities = 42/43 (97%), Positives = 43/43 (99%)
Frame = -3
Query: 491 LLFKPAPLYILDEVDAALDLSHTRNIGRMIKAHFPHSQFIVVS 363
LLFKPAPLYILDEVDAALDLSHT+NIGRMIKAHFPHSQFIVVS
Sbjct: 1100 LLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVS 1142
Score = 59.3 bits (142), Expect(2) = 2e-28
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -1
Query: 361 LKEGMFNNANVLFRTKFVDGVSTVQRTVATKQ 266
LKEGMFNNANV+FRTKFVDGVSTV RTV +KQ
Sbjct: 1143 LKEGMFNNANVIFRTKFVDGVSTVTRTVPSKQ 1174
>ref|NP_190330.1| chromosome assembly protein homolog; protein id: At3g47460.1
[Arabidopsis thaliana] gi|11278963|pir||T45706
chromosome-associated protein E homolog F1P2.10 -
Arabidopsis thaliana gi|6522529|emb|CAB61972.1|
chromosome assembly protein homolog [Arabidopsis
thaliana]
Length = 1171
Score = 85.9 bits (211), Expect(2) = 5e-27
Identities = 40/43 (93%), Positives = 43/43 (99%)
Frame = -3
Query: 491 LLFKPAPLYILDEVDAALDLSHTRNIGRMIKAHFPHSQFIVVS 363
LLFKPAP+YILDEVDAALDLSHT+NIGRMIK+HFPHSQFIVVS
Sbjct: 1097 LLFKPAPIYILDEVDAALDLSHTQNIGRMIKSHFPHSQFIVVS 1139
Score = 56.2 bits (134), Expect(2) = 5e-27
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -1
Query: 361 LKEGMFNNANVLFRTKFVDGVSTVQRTVATKQN 263
LKEGMF+NA+VLFRTKFVDGVSTVQRTV TKQ+
Sbjct: 1140 LKEGMFSNADVLFRTKFVDGVSTVQRTV-TKQS 1171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,915,849
Number of Sequences: 1393205
Number of extensions: 7757011
Number of successful extensions: 15523
Number of sequences better than 10.0: 239
Number of HSP's better than 10.0 without gapping: 15173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15522
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
