Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004911A_C02 KMC004911A_c02
(749 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arab... 103 2e-21
pir||T04799 hypothetical protein F10M23.100 - Arabidopsis thalia... 101 1e-20
ref|NP_567756.1| putative protein; protein id: At4g26760.1, supp... 101 1e-20
emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota] 99 5e-20
emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotia... 97 2e-19
>ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arabidopsis thaliana]
gi|9758120|dbj|BAB08592.1|
gene_id:MCO15.18~pir||T04799~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|28416713|gb|AAO42887.1| At5g55230 [Arabidopsis
thaliana]
Length = 587
Score = 103 bits (258), Expect = 2e-21
Identities = 58/108 (53%), Positives = 77/108 (70%), Gaps = 9/108 (8%)
Frame = -2
Query: 748 LAMDMI*QAEVEIESLGQLTTSMMKDISVKKQGKLEEIFSRAHVEIDPEDAIDR------ 587
LA D+I QAEVE++ L QL S MK+I+ KKQ +LEEI++RAHVE++PE A +R
Sbjct: 291 LARDLIEQAEVEVDRLDQLKASRMKEIAFKKQSELEEIYARAHVEVNPESARERIMSLID 350
Query: 586 ---MGHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 452
+ + +LA MDSQ +KA+ A SRKDILD+V+K M A EEESW+E
Sbjct: 351 SGNVEPTELLADMDSQISKAKEEAFSRKDILDRVEKWMSACEEESWLE 398
>pir||T04799 hypothetical protein F10M23.100 - Arabidopsis thaliana
gi|4455199|emb|CAB36522.1| putative protein [Arabidopsis
thaliana] gi|7269528|emb|CAB79531.1| putative protein
[Arabidopsis thaliana]
Length = 473
Score = 101 bits (252), Expect = 1e-20
Identities = 57/108 (52%), Positives = 77/108 (70%), Gaps = 9/108 (8%)
Frame = -2
Query: 748 LAMDMI*QAEVEIESLGQLTTSMMKDISVKKQGKLEEIFSRAHVEIDPEDAIDRM----- 584
LA+D+I QAEVE++ L QL +S MK+I+ KKQ +LEEI++RAH+EI PE +R+
Sbjct: 301 LALDLIEQAEVEVDRLDQLKSSRMKEIAFKKQSELEEIYARAHIEIKPEVVRERIMSLID 360
Query: 583 ----GHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 452
+ +LA MDSQ AKA+ A SRK+ILD+V+K M A EEESW+E
Sbjct: 361 AGNTEPTELLADMDSQIAKAKEEAFSRKEILDRVEKWMSACEEESWLE 408
>ref|NP_567756.1| putative protein; protein id: At4g26760.1, supported by cDNA:
151418., supported by cDNA: gi_18377611 [Arabidopsis
thaliana] gi|21553564|gb|AAM62657.1|
microtubule-associated protein MAP65-1a [Arabidopsis
thaliana]
Length = 578
Score = 101 bits (252), Expect = 1e-20
Identities = 57/108 (52%), Positives = 77/108 (70%), Gaps = 9/108 (8%)
Frame = -2
Query: 748 LAMDMI*QAEVEIESLGQLTTSMMKDISVKKQGKLEEIFSRAHVEIDPEDAIDRM----- 584
LA+D+I QAEVE++ L QL +S MK+I+ KKQ +LEEI++RAH+EI PE +R+
Sbjct: 291 LALDLIEQAEVEVDRLDQLKSSRMKEIAFKKQSELEEIYARAHIEIKPEVVRERIMSLID 350
Query: 583 ----GHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 452
+ +LA MDSQ AKA+ A SRK+ILD+V+K M A EEESW+E
Sbjct: 351 AGNTEPTELLADMDSQIAKAKEEAFSRKEILDRVEKWMSACEEESWLE 398
>emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota]
Length = 576
Score = 99.4 bits (246), Expect = 5e-20
Identities = 58/108 (53%), Positives = 74/108 (67%), Gaps = 9/108 (8%)
Frame = -2
Query: 748 LAMDMI*QAEVEIESLGQLTTSMMKDISVKKQGKLEEIFSRAHVEIDPEDAIDR------ 587
LA+D+I QAEVE+E L QL S MK+I+ K+Q +LEEI+ AHVEID E A +R
Sbjct: 292 LALDLIEQAEVEVERLDQLKASRMKEIAFKRQAELEEIYVHAHVEIDSEAARERIMALID 351
Query: 586 ---MGHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 452
+ + +L MD+Q KA+ ALSRKDILDKV+K M A EEESW+E
Sbjct: 352 SGDVEPAELLDDMDNQIVKAKEEALSRKDILDKVEKWMSACEEESWLE 399
>emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotiana tabacum]
Length = 580
Score = 97.1 bits (240), Expect = 2e-19
Identities = 55/108 (50%), Positives = 75/108 (68%), Gaps = 9/108 (8%)
Frame = -2
Query: 748 LAMDMI*QAEVEIESLGQLTTSMMKDISVKKQGKLEEIFSRAHVEIDPEDAIDR------ 587
LA+D+I QAEVE+E L QL S MK+I+ K+Q +LE+I++RAHVEID E A ++
Sbjct: 292 LALDLIEQAEVEVERLDQLKASKMKEIAFKRQAELEDIYARAHVEIDTEAAREKIMALID 351
Query: 586 ---MGHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 452
+ + +LA MD+Q A+ A SRK+ILDKV+K M A EEESW+E
Sbjct: 352 SGNVDPAELLADMDNQIVNAKEEAHSRKEILDKVEKWMAACEEESWLE 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,671,671
Number of Sequences: 1393205
Number of extensions: 11594942
Number of successful extensions: 23957
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23924
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
