Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004910A_C01 KMC004910A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198043.1| putative protein; protein id: At5g26910.1 [Arab... 106 3e-22
pir||T01769 hypothetical protein A_IG002P16.18 - Arabidopsis tha... 106 3e-22
ref|NP_187226.1| hypothetical protein; protein id: At3g05750.1 [... 101 7e-21
ref|NP_191424.1| putative protein; protein id: At3g58650.1 [Arab... 100 1e-20
dbj|BAC43056.1| unknown protein [Arabidopsis thaliana] gi|290290... 100 2e-20
>ref|NP_198043.1| putative protein; protein id: At5g26910.1 [Arabidopsis thaliana]
Length = 900
Score = 106 bits (264), Expect = 3e-22
Identities = 55/137 (40%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Frame = -3
Query: 635 VIMPNLFDLLENQXSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKSW-PRW 459
V+ +LFD +E + +K++RK LFD V++CL LR Q F+G C+ +
Sbjct: 746 VLPASLFDEMEGRGEVTA-------AKIKRKTLFDFVNKCLALRCEQMFMGSCRGLLGKG 798
Query: 458 VTSVQRKRWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEVEQ 279
+++ WLAEEL +E+ G + M E+M+DELV K+MS+ G+WLDF+ E +EEG ++E
Sbjct: 799 GFLFEQRDWLAEELNREIHGLKKMREMMMDELVDKEMSSFEGRWLDFERETYEEGIDIEG 858
Query: 278 DILASLINELVSDLLLG 228
+I+++L+++LV+DL+ G
Sbjct: 859 EIVSTLVDDLVNDLVSG 875
>pir||T01769 hypothetical protein A_IG002P16.18 - Arabidopsis thaliana
gi|2191167|gb|AAB61053.1| Hypothetical protein F2P16.18
[Arabidopsis thaliana]
Length = 912
Score = 106 bits (264), Expect = 3e-22
Identities = 55/137 (40%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Frame = -3
Query: 635 VIMPNLFDLLENQXSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKSW-PRW 459
V+ +LFD +E + +K++RK LFD V++CL LR Q F+G C+ +
Sbjct: 758 VLPASLFDEMEGRGEVTA-------AKIKRKTLFDFVNKCLALRCEQMFMGSCRGLLGKG 810
Query: 458 VTSVQRKRWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEVEQ 279
+++ WLAEEL +E+ G + M E+M+DELV K+MS+ G+WLDF+ E +EEG ++E
Sbjct: 811 GFLFEQRDWLAEELNREIHGLKKMREMMMDELVDKEMSSFEGRWLDFERETYEEGIDIEG 870
Query: 278 DILASLINELVSDLLLG 228
+I+++L+++LV+DL+ G
Sbjct: 871 EIVSTLVDDLVNDLVSG 887
>ref|NP_187226.1| hypothetical protein; protein id: At3g05750.1 [Arabidopsis thaliana]
gi|6714388|gb|AAF26077.1|AC012393_3 hypothetical protein
[Arabidopsis thaliana]
Length = 798
Score = 101 bits (252), Expect = 7e-21
Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Frame = -3
Query: 614 DLLENQXSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKS-WPRWVTSVQRK 438
D+L TE D K+ERK LFD V++ L L+ Q F+G CK + ++R+
Sbjct: 668 DILPLSLFDETEGKRDARGKIERKTLFDLVNQWLTLKCEQMFMGTCKGVLGKQDIFLERR 727
Query: 437 RWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEVEQDILASLI 258
LA+++ KE G + M E+M+DELV DMS+ GKWLD+ E +EEG E+E++I++ L+
Sbjct: 728 EILADQVLKEAQGLKKMREMMMDELVDNDMSSCEGKWLDYMRETYEEGIEIEEEIVSELV 787
Query: 257 NELVSDLLL 231
++L++DL++
Sbjct: 788 DDLINDLIM 796
>ref|NP_191424.1| putative protein; protein id: At3g58650.1 [Arabidopsis thaliana]
gi|11292204|pir||T45685 hypothetical protein F14P22.240 -
Arabidopsis thaliana gi|6735382|emb|CAB68203.1| putative
protein [Arabidopsis thaliana]
Length = 820
Score = 100 bits (250), Expect = 1e-20
Identities = 51/137 (37%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Frame = -3
Query: 641 DTVIMPNLFDLLENQXSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKSWPR 462
++++ +LFD +E + T K ERK LFDCV++CL ++F + +G CK
Sbjct: 680 ESLLPSSLFDEMERSRGAATS------MKTERKALFDCVNQCLAVKFERMLIGSCKGMMM 733
Query: 461 -WVTSVQRKRWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEV 285
++ + LAEE+ +E+ G + M E+M+DELV DMS G+W+ ++ E FEEG ++
Sbjct: 734 SGGILLEHRDLLAEEVNREVKGLKKMREMMIDELVDHDMSCFEGRWIGYEREMFEEGIDM 793
Query: 284 EQDILASLINELVSDLL 234
E +I+++L+++LVSD+L
Sbjct: 794 EGEIVSALVDDLVSDIL 810
>dbj|BAC43056.1| unknown protein [Arabidopsis thaliana] gi|29029000|gb|AAO64879.1|
At3g58650 [Arabidopsis thaliana]
Length = 660
Score = 100 bits (249), Expect = 2e-20
Identities = 50/137 (36%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Frame = -3
Query: 641 DTVIMPNLFDLLENQXSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKSWPR 462
++++ +LFD +E + T K ERK LFDCV++CL ++F + +G CK
Sbjct: 520 ESLLPSSLFDEMERSRGAATS------MKTERKALFDCVNQCLAVKFERMLIGSCKGMMM 573
Query: 461 -WVTSVQRKRWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEV 285
++ + LAEE+ +E+ G + M E+M+DELV DMS G+W+ ++ E FEEG ++
Sbjct: 574 SGGILLEHRDLLAEEVNREVKGLKKMREMMIDELVDHDMSCFEGRWIGYEREMFEEGIDM 633
Query: 284 EQDILASLINELVSDLL 234
E +I+++L+++L+SD+L
Sbjct: 634 EGEIVSALVDDLISDIL 650
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,431,968
Number of Sequences: 1393205
Number of extensions: 11576976
Number of successful extensions: 33272
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 31355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33086
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
