Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004905A_C01 KMC004905A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA30831.1| predicted protein [Neurospora crassa] 34 1.5
ref|NP_497730.1| Putative protein, nematode specific [Caenorhabd... 34 1.5
ref|XP_197174.1| hypothetical protein XP_197174 [Mus musculus] 33 2.6
dbj|BAB39134.1| CD11-1 [Cyprinus carpio] 32 4.5
ref|NP_725446.1| CG30079-PA [Drosophila melanogaster] gi|2162714... 32 7.7
>gb|EAA30831.1| predicted protein [Neurospora crassa]
Length = 1166
Score = 33.9 bits (76), Expect = 1.5
Identities = 19/65 (29%), Positives = 30/65 (45%)
Frame = -2
Query: 273 PSNPGCSHSPSPHFPREICANPEINGFIESNMQMIFTFYVFFCTSYCQVNTAIITNVLSV 94
PS P S+ P P+ P+ +PE + S M + C+ +T +ITN LS
Sbjct: 467 PSTPAISNQPDPNTPQSSTDSPESHTKTSSTTTMENYQKLTVSEPLCEGDTTVITNALSP 526
Query: 93 HVGAE 79
+ A+
Sbjct: 527 DLAAD 531
>ref|NP_497730.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7497892|pir||T20196 hypothetical protein C54C6.4 -
Caenorhabditis elegans gi|3875184|emb|CAB00855.1|
Hypothetical protein C54C6.4 [Caenorhabditis elegans]
Length = 156
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/54 (27%), Positives = 31/54 (56%), Gaps = 2/54 (3%)
Frame = -2
Query: 225 EICANPEINGFIESNMQMIFTF--YVFFCTSYCQVNTAIITNVLSVHVGAENCS 70
++C+N ++ F SN++M F+F + FFC Q++T ++ + + + CS
Sbjct: 96 QLCSNLSLHYFCMSNIRMTFSFVYFCFFCFRLLQLSTWLLLSTYFIIIVKRGCS 149
>ref|XP_197174.1| hypothetical protein XP_197174 [Mus musculus]
Length = 161
Score = 33.1 bits (74), Expect = 2.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 384 WRKIGGW*QFSC*AFFSLFAEMSSICHFGISAPTLSLPSNPGCSHSPSPHFPRE-ICANP 208
W + G W + S AF + + ++ HFG L PS+ GCS E + P
Sbjct: 14 WLRTGSWLRPSGHAFILVGPPLPAVLHFGELPVELWAPSSRGCSRRKGREERNEHVDTVP 73
Query: 207 EINGFIESNMQMI 169
E++G I ++ + +
Sbjct: 74 ELSGIIRNHNKKV 86
>dbj|BAB39134.1| CD11-1 [Cyprinus carpio]
Length = 1196
Score = 32.3 bits (72), Expect = 4.5
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = -2
Query: 315 SICHFGISAPTLSLPSNPGCSHSPSPHFPREICANPEINGF---IESNMQMIFTFYVFFC 145
S+ FG+SA S S SP+FP E N +NG S++Q + F
Sbjct: 99 SVRFFGMSAAVSSAALT-----SCSPYFPHECDGNSYLNGVCYQFSSSLQAVSNF----- 148
Query: 144 TSYCQVNTAIITNVLSVHVGAENCSAFDFELSCNYI 37
T+ Q + N++ + G+ + DFE++ N+I
Sbjct: 149 TAAYQECSKREVNLVFLFDGSSSMKTVDFEMNKNFI 184
>ref|NP_725446.1| CG30079-PA [Drosophila melanogaster] gi|21627147|gb|AAM68527.1|
CG30079-PA [Drosophila melanogaster]
Length = 466
Score = 31.6 bits (70), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -2
Query: 342 FFSLFAEMSSICHFGISAPTLSLPSNPGCSHSPSPHFPR 226
+ S+ E+ S+CH I++PT+SLPSN P R
Sbjct: 44 YTSITDELESVCHM-IASPTVSLPSNKASLDRPKTEMSR 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,359,344
Number of Sequences: 1393205
Number of extensions: 11356984
Number of successful extensions: 25695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25687
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
