Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004902A_C01 KMC004902A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK51687.1| NADH dehydrogenase subunit 6 [Echinococcus granul... 35 0.66
>gb|AAK51687.1| NADH dehydrogenase subunit 6 [Echinococcus granulosus]
Length = 151
Score = 34.7 bits (78), Expect = 0.66
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 270 LLICVLRRILNCGNQVNSFSSMLCQLTTGLMYLSINIRIVFAHLFLT 410
L ICVL L G++ FS MLC ++ G +YL + + +VF L L+
Sbjct: 97 LFICVLIYYLLVGSE---FSGMLCNVSEGWLYLCLCLSLVFGFLVLS 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,723,555
Number of Sequences: 1393205
Number of extensions: 7592293
Number of successful extensions: 15346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15344
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
