KMC004901A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004901A_C01 KMC004901A_c01
aatagaaaTGATTGAGTAAACACTGAACATCTCGTTATATCCAAAGGAAAAAAATGAACA
GCTCATGCTAATTAATCAGACATAACCAAGCCTAATGGTATTGGTTAAAACTAAGTAGAC
TTCATATATTATCTTACTATATACAAAAGGCTTGGAAACTGAAAAAAAGCAGAATATAAC
TAGATTGCAAAGATCTAGACACATACATACATATATAGATTGCAAAGATCTAACAGCCCC
CATGGTTGAGGAGGCAATCTAGTACCATTCTTCTCCTACATTGCCAGTTGTATGGTTCTA
TGGCGATAATATAAGTTGAAAAAGGGCCAAAAACAGGAGGTTGTGGAAACAACTGACCAA
GAAAGATGGCAAAATGAATTAATTAATTGTCAAAGTGAAAGACATTGTACCCTGTCTGGC
AGATTTTTAGGCATTGGAACTGCAGTGACATATTTCTGGGGGTATGCTTTCTGAGCAGTT
GTATCAGAGGATGATGAGGTCTCTGCCCCATCCTTTTGCCCTCGTCCATGTCCATGGAAC
TTGGCAAACCGATTGATGACAGAAAATCTTTCTAAATCTTGTAACTCAACTCTCAAGTCC
AAAATTGAGGCTCTGCTATCCAATCTCAATATATCATTTTCCAGTTTCCTCGCCCTACCA
ACAAAGTCTTCCACTTTCGAAATGCACTGGTCGATTTTCTCAGATGGCTTAAGCGTATCC
GGCAGGTGGTTTTGGCTGCCAGGGGGCACTAGTGTGTCACTTCCGCACAATGAGACTGAA
CTGCAAGCATCTCCTAACACTAATCTAGCAACAGAGTAAACCACACTATCATGATGCAAC
TTGACATCCGCAGAGAGAACTGCAGCTGGTGGAGGGTTAAGTAGTTGTTGCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004901A_C01 KMC004901A_c01
(892 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196415.1| unknown protein; protein id: At5g07980.1 [Arabi... 146 4e-34
ref|NP_196411.1| unknown protein; protein id: At5g07940.1 [Arabi... 143 3e-33
pir||T45619 hypothetical protein F13G24.140 - Arabidopsis thalia... 127 2e-28
ref|NP_196414.1| unknown protein; protein id: At5g07970.1 [Arabi... 125 9e-28
ref|NP_683606.1| hypothetical protein; protein id: At3g29385.1 [... 84 2e-15
>ref|NP_196415.1| unknown protein; protein id: At5g07980.1 [Arabidopsis thaliana]
gi|11357396|pir||T45623 hypothetical protein F13G24.180 -
Arabidopsis thaliana gi|6562312|emb|CAB62610.1| putative
protein [Arabidopsis thaliana]
gi|10176732|dbj|BAB09962.1| gene_id:MXM12.22~unknown
protein [Arabidopsis thaliana]
Length = 1501
Score = 146 bits (369), Expect = 4e-34
Identities = 82/167 (49%), Positives = 103/167 (61%), Gaps = 1/167 (0%)
Frame = -3
Query: 890 QQLLNPPPAAVLSADVKLHHDSVVYSVARLVLGDACSSVSLCGSDTLVPPGSQNHLPDTL 711
QQL +PPPA V+S +++ V Y+ AR LGDACSS S S+ PP N L +
Sbjct: 1345 QQLCSPPPARVISLVASSNYEFVAYTAARGALGDACSSSSTDRSEGFWPPNISNPLSERT 1404
Query: 710 KPSEKIDQCISKV-EDFVGRARKLENDILRLDSRASILDLRVELQDLERFSVINRFAKFH 534
K + DQ ISK EDF+ R RKLE D RL++ +I DLRVE+QDLE+F+VINRFAKFH
Sbjct: 1405 KTEKISDQYISKAAEDFISRTRKLETDFARLENGTTIPDLRVEVQDLEKFAVINRFAKFH 1464
Query: 533 GHGRGQKDGAETSSSSDTTAQKAYPQKYVTAVPMPKNLPDRVQCLSL 393
S + + PQ+YVT PMP+N+PDRVQCLSL
Sbjct: 1465 ----------PPSMDRTLNSVRINPQRYVTVAPMPQNIPDRVQCLSL 1501
>ref|NP_196411.1| unknown protein; protein id: At5g07940.1 [Arabidopsis thaliana]
gi|10176728|dbj|BAB09958.1| gene_id:MXM12.18~unknown
protein [Arabidopsis thaliana]
Length = 1526
Score = 143 bits (361), Expect = 3e-33
Identities = 80/167 (47%), Positives = 103/167 (60%), Gaps = 1/167 (0%)
Frame = -3
Query: 890 QQLLNPPPAAVLSADVKLHHDSVVYSVARLVLGDACSSVSLCGSDTLVPPGSQNHLPDTL 711
QQL +PPPA V+S ++D V Y+ R LGDACSS S S+ PP + N L +
Sbjct: 1368 QQLFSPPPARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERT 1427
Query: 710 KPSEKIDQCISKV-EDFVGRARKLENDILRLDSRASILDLRVELQDLERFSVINRFAKFH 534
+ + DQ ISK EDF+ R RKLE D L++ +I DLRVE+QDLE+F+VINRFAKFH
Sbjct: 1428 ENEKISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFH 1487
Query: 533 GHGRGQKDGAETSSSSDTTAQKAYPQKYVTAVPMPKNLPDRVQCLSL 393
+S + + K Q+YVT PMP+N+PDRVQCLSL
Sbjct: 1488 --------PPSSSMNRTVNSLKLNLQRYVTIAPMPQNIPDRVQCLSL 1526
>pir||T45619 hypothetical protein F13G24.140 - Arabidopsis thaliana
gi|6562308|emb|CAB62606.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1540
Score = 127 bits (319), Expect = 2e-28
Identities = 76/163 (46%), Positives = 98/163 (59%), Gaps = 2/163 (1%)
Frame = -3
Query: 890 QQLLNPPPAAVLSADVKLHHDSVVYSVARLVLGDACSSVSLCGSDTLVPPGSQNHLPDTL 711
QQL +PPPA V+S ++D V Y+ R LGDACSS S S+ PP + N +
Sbjct: 1368 QQLFSPPPARVISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPTEN-- 1425
Query: 710 KPSEKI-DQCISKV-EDFVGRARKLENDILRLDSRASILDLRVELQDLERFSVINRFAKF 537
EKI DQ ISK EDF+ R RKLE D L++ +I DLRVE+QDLE+F+VINRFAKF
Sbjct: 1426 ---EKISDQYISKAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKF 1482
Query: 536 HGHGRGQKDGAETSSSSDTTAQKAYPQKYVTAVPMPKNLPDRV 408
H +S + + K Q+YVT PMP+N+PDR+
Sbjct: 1483 H--------PPSSSMNRTVNSLKLNLQRYVTIAPMPQNIPDRL 1517
>ref|NP_196414.1| unknown protein; protein id: At5g07970.1 [Arabidopsis thaliana]
gi|11357395|pir||T45622 hypothetical protein F13G24.170 -
Arabidopsis thaliana gi|6562311|emb|CAB62609.1| putative
protein [Arabidopsis thaliana]
gi|10176731|dbj|BAB09961.1| gene_id:MXM12.21~unknown
protein [Arabidopsis thaliana]
Length = 1097
Score = 125 bits (314), Expect = 9e-28
Identities = 75/168 (44%), Positives = 100/168 (58%), Gaps = 3/168 (1%)
Frame = -3
Query: 890 QQLLNPPPAAVLSADVKLHHDSVVYSVARLVLGDACSSVSLCGSDTLVPPGSQNHLPDTL 711
QQL P P V S + ++ V YS AR LGDACSS S + + + N L +
Sbjct: 941 QQLFRPLPGRVKS--LVTSYEFVAYSAARAALGDACSSTSTDRIEGFLLQNNLNPLSERT 998
Query: 710 KPSEKIDQCISKV-EDFVGRARKLENDILRLDSRASILDLRVELQDLERFSVINRFAKFH 534
+ + DQ ISK EDF+ R +KLE D L+ +I DLRVE+QDLERF+VINRFA FH
Sbjct: 999 ETEKMSDQYISKAAEDFISRTKKLETDFAGLEKGTTITDLRVEVQDLERFAVINRFASFH 1058
Query: 533 GHGRGQKDGAETSSSSD--TTAQKAYPQKYVTAVPMPKNLPDRVQCLS 396
++SSS D ++ + PQ+YVT P+P+++PDRVQCLS
Sbjct: 1059 ----------QSSSSMDRSVSSLRLNPQRYVTVAPVPRHIPDRVQCLS 1096
>ref|NP_683606.1| hypothetical protein; protein id: At3g29385.1 [Arabidopsis
thaliana]
Length = 218
Score = 84.3 bits (207), Expect = 2e-15
Identities = 61/168 (36%), Positives = 84/168 (49%), Gaps = 2/168 (1%)
Frame = -3
Query: 890 QQLLNPPPAAVLSAD-VKLHHDSVVYSVARLVLGDACSSVSLCGSDTLVPPGSQNHLPDT 714
QQLL P P V D L+++ V+Y V+R+ L ++CS C SD Q T
Sbjct: 72 QQLLQPAPTFVFLGDNAALNYEIVLYYVSRINLANSCSLK--CRSDLDKSINRQ-----T 124
Query: 713 LKPSEKIDQCISK-VEDFVGRARKLENDILRLDSRASILDLRVELQDLERFSVINRFAKF 537
K + DQ S V F + +KLE++ L+ SILD+ E+QDLERFS+IN KF
Sbjct: 125 SKTASNQDQQHSLLVNAFNEKIQKLESNFQSLERTTSILDIIFEIQDLERFSMINHLGKF 184
Query: 536 HGHGRGQKDGAETSSSSDTTAQKAYPQKYVTAVPMPKNLPDRVQCLSL 393
H + T ++ P KY A+ MP NLP+ + CL L
Sbjct: 185 HNRAK--------------TFKRLIPHKYAVAIQMPMNLPEPLHCLPL 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 774,424,657
Number of Sequences: 1393205
Number of extensions: 16961175
Number of successful extensions: 44579
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 42631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44550
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48496973238
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MWL060b06_f |
AV769616 |
1 |
593 |
| 2 |
MPDL040a10_f |
AV778509 |
6 |
505 |
| 3 |
MWL078e08_f |
AV769992 |
14 |
261 |
| 4 |
MRL020c11_f |
BP084737 |
112 |
575 |
| 5 |
SPDL064d05_f |
BP055975 |
167 |
735 |
| 6 |
MPDL082a09_f |
AV780748 |
168 |
692 |
| 7 |
SPDL060h02_f |
BP055773 |
169 |
696 |
| 8 |
MPDL086c05_f |
AV780977 |
366 |
905 |
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Lotus japonicus
Kazusa DNA Research Institute