Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004900A_C01 KMC004900A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_616971.1| predicted protein [Methanosarcina acetivorans s... 35 0.59
ref|NP_241691.1| BH0825~unknown conserved protein in B. subtilis... 33 1.7
gb|EAA43005.1| GLP_170_156422_159259 [Giardia lamblia ATCC 50803] 30 4.1
ref|NP_477840.1| wsv318 [shrimp white spot syndrome virus] gi|17... 32 6.5
ref|NP_492228.1| Putative protein of bilaterial origin (67.9 kD)... 32 6.5
>ref|NP_616971.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19915973|gb|AAM05451.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 138
Score = 35.0 bits (79), Expect = 0.59
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 7/53 (13%)
Frame = -2
Query: 442 SLGVLDFLALSLSRKFSLDL------YLFCFCYYI-TEFISFCSFYCLLFVGT 305
SLG FLAL L F D+ Y F FC + I+ CS YC F+G+
Sbjct: 50 SLGYFSFLALPLIILFCFDILLCRSAYCFTFCLLLYVLLIALCSAYCFNFIGS 102
>ref|NP_241691.1| BH0825~unknown conserved protein in B. subtilis [Bacillus
halodurans] gi|25333025|pir||A83753 hypothetical protein
BH0825 [imported] - Bacillus halodurans (strain C-125)
gi|10173439|dbj|BAB04544.1| BH0825~unknown conserved
protein in B. subtilis [Bacillus halodurans]
Length = 177
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 23 LNLYKIIAKSMPLIRMKHQTALALHDEDS*KVIWYSTHNNKILNSKWYPKPVWHSAGHFT 202
L++ ++I K ++ + +T ALHD+D + W + +W +WH A H
Sbjct: 102 LSVQELIEKQRYVLALLKETCQALHDDDLAR--WIPYEEERQATIRW---GLWHMADHHR 156
Query: 203 YQTQEIRRER 232
Y I R R
Sbjct: 157 YHQAHINRLR 166
>gb|EAA43005.1| GLP_170_156422_159259 [Giardia lamblia ATCC 50803]
Length = 945
Score = 29.6 bits (65), Expect(2) = 4.1
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = +1
Query: 199 HISDTRDPPRTILKLNWMQVKSSPLSWSSVIYRR 300
H S PP+ +LK N Q S P WSS RR
Sbjct: 717 HESPQIAPPQVVLKANQRQAASDPRPWSSSQRRR 750
Score = 21.2 bits (43), Expect(2) = 4.1
Identities = 7/15 (46%), Positives = 11/15 (72%)
Frame = +3
Query: 366 QKQNKYKSRENFLDK 410
Q N Y++ E+F+DK
Sbjct: 764 QSANSYRNYEHFIDK 778
>ref|NP_477840.1| wsv318 [shrimp white spot syndrome virus]
gi|17016714|gb|AAL33320.1| wsv318 [shrimp white spot
syndrome virus]
Length = 74
Score = 31.6 bits (70), Expect = 6.5
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = -1
Query: 386 FILILFLLLYY*VHFLLFILLSAFC 312
F+L+LFL L++ + F+LFI+++A C
Sbjct: 49 FLLLLFLSLFFILFFILFIIIAATC 73
>ref|NP_492228.1| Putative protein of bilaterial origin (67.9 kD) [Caenorhabditis
elegans] gi|7495803|pir||T19169 hypothetical protein
C09H6.3 - Caenorhabditis elegans
gi|3874207|emb|CAB03867.1| Hypothetical protein C09H6.3
[Caenorhabditis elegans]
Length = 593
Score = 31.6 bits (70), Expect = 6.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 194 VLRCARLVWGTTYYLVFCCYVYCTISPFKSLHHVRPML 81
V+RC ++ TT ++ CC V P K+LH+VR ML
Sbjct: 312 VVRCINMIKMTTLEMMACCNV-LACRPQKTLHNVRDML 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,573,308
Number of Sequences: 1393205
Number of extensions: 9879996
Number of successful extensions: 24654
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24606
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
