Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004898A_C01 KMC004898A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_063309.1| similar to seven transmembrane helix receptor [... 35 0.54
dbj|BAC05797.1| seven transmembrane helix receptor [Homo sapiens] 35 0.54
gb|EAA04169.1| agCP3894 [Anopheles gambiae str. PEST] 32 3.5
ref|XP_139029.1| similar to toll-like receptor Tlr2.1 [Strongylo... 32 4.5
gb|AAK95055.1| olfactory receptor [Homo sapiens] 32 5.9
>ref|XP_063309.1| similar to seven transmembrane helix receptor [Homo sapiens]
Length = 306
Score = 35.0 bits (79), Expect = 0.54
Identities = 14/52 (26%), Positives = 29/52 (54%)
Frame = -2
Query: 406 SGLIKNLCFLNVIIETGCLILYQEWRSGRRASSCMSSMIRDCLILASYFSSC 251
SGL+ +CFL +++ G +I +R+ R+S S++ ++ +F+ C
Sbjct: 203 SGLLSLVCFLLLLVSYGVIIFSVRYRAASRSSKAFSTLSAHITVVTLFFAPC 254
>dbj|BAC05797.1| seven transmembrane helix receptor [Homo sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.54
Identities = 14/52 (26%), Positives = 29/52 (54%)
Frame = -2
Query: 406 SGLIKNLCFLNVIIETGCLILYQEWRSGRRASSCMSSMIRDCLILASYFSSC 251
SGL+ +CFL +++ G +I +R+ R+S S++ ++ +F+ C
Sbjct: 203 SGLLSLVCFLLLLVSYGVIIFSVRYRAASRSSKAFSTLSAHITVVTLFFAPC 254
>gb|EAA04169.1| agCP3894 [Anopheles gambiae str. PEST]
Length = 293
Score = 32.3 bits (72), Expect = 3.5
Identities = 19/49 (38%), Positives = 25/49 (50%)
Frame = +3
Query: 216 TLLECLFSLNKVQEEKYDAKIKQSRIIEDMHELALRPDLHS**RIKQPV 362
T LE S N +Q E A K RI+E + L P L+S I+QP+
Sbjct: 6 TRLENAPSPNTIQTENIQAVQKSERIVEQRSNIVLAPQLNSKQAIQQPI 54
>ref|XP_139029.1| similar to toll-like receptor Tlr2.1 [Strongylocentrotus
purpuratus] [Mus musculus]
Length = 836
Score = 32.0 bits (71), Expect = 4.5
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = -3
Query: 228 TLIMLLLVL*LNLLFL*ESISGWRTTHHKWTYCKRKVLTLWWKFNGSKSKFNFSF 64
+ I+LLL++ L L+ S W HH WT T WWK G + + F++
Sbjct: 638 SFILLLLLIILPLI----SCPKWSWLHHLWTLFH----TCWWKLCGHRLRGQFNY 684
>gb|AAK95055.1| olfactory receptor [Homo sapiens]
Length = 213
Score = 31.6 bits (70), Expect = 5.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 406 SGLIKNLCFLNVIIETGCLILYQEWRSGRRASSCMSSMIRDCLILASYFSSCTLF 242
SGLI CFL +II +++ RS +S +S++ ++ +F C F
Sbjct: 136 SGLISLSCFLALIISYTIILIGVRCRSSSGSSKALSTLTAHITVVILFFGPCIYF 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,125,680
Number of Sequences: 1393205
Number of extensions: 10111666
Number of successful extensions: 21709
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21698
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
