Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004897A_C02 KMC004897A_c02
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subunit [A... 193 2e-48
ref|NP_197244.1| cellulose synthase catalytic subunit (IRX3); pr... 193 2e-48
gb|AAM26299.1| cellulose synthase [Populus tremuloides] 191 8e-48
dbj|BAC57282.1| cellulose synthase-4 [Oryza sativa (japonica cul... 176 3e-43
gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays] 176 3e-43
>gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subunit [Arabidopsis thaliana]
Length = 1026
Score = 193 bits (490), Expect = 2e-48
Identities = 91/94 (96%), Positives = 92/94 (97%)
Frame = -3
Query: 590 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 411
IINIVGVVAG+SDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW
Sbjct: 933 IINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 992
Query: 410 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 309
SVLLASIFSLLWVRIDPFVLKTKGPDT CGINC
Sbjct: 993 SVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>ref|NP_197244.1| cellulose synthase catalytic subunit (IRX3); protein id: At5g17420.1,
supported by cDNA: gi_4886755 [Arabidopsis thaliana]
gi|11357223|pir||T51579 cellulose synthase catalytic
subunit (IRX3) - Arabidopsis thaliana
gi|5230423|gb|AAD40885.1|AF091713_1 cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|9755765|emb|CAC01737.1| cellulose synthase catalytic
subunit (IRX3) [Arabidopsis thaliana]
gi|22654965|gb|AAM98075.1| AT5g17420/T10B6_80
[Arabidopsis thaliana] gi|28416517|gb|AAO42789.1|
AT5g17420/T10B6_80 [Arabidopsis thaliana]
Length = 1026
Score = 193 bits (490), Expect = 2e-48
Identities = 91/94 (96%), Positives = 92/94 (97%)
Frame = -3
Query: 590 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 411
IINIVGVVAG+SDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW
Sbjct: 933 IINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 992
Query: 410 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 309
SVLLASIFSLLWVRIDPFVLKTKGPDT CGINC
Sbjct: 993 SVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>gb|AAM26299.1| cellulose synthase [Populus tremuloides]
Length = 1032
Score = 191 bits (484), Expect = 8e-48
Identities = 88/94 (93%), Positives = 93/94 (98%)
Frame = -3
Query: 590 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 411
IIN+VGVVAGVSDAINNGYQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVVIW
Sbjct: 939 IINLVGVVAGVSDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIW 998
Query: 410 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 309
SVLLASIFSLLWVRIDPFV+KT+GPDTK CG+NC
Sbjct: 999 SVLLASIFSLLWVRIDPFVMKTRGPDTKQCGLNC 1032
>dbj|BAC57282.1| cellulose synthase-4 [Oryza sativa (japonica cultivar-group)]
Length = 1081
Score = 176 bits (445), Expect = 3e-43
Identities = 79/94 (84%), Positives = 88/94 (93%)
Frame = -3
Query: 590 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 411
IIN+VGVVAG+S AIN+GYQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVV+W
Sbjct: 988 IINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1047
Query: 410 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 309
++LLASIFSLLWVRIDPF + GPDT+ CGINC
Sbjct: 1048 AILLASIFSLLWVRIDPFTTRVTGPDTQTCGINC 1081
>gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays]
Length = 1077
Score = 176 bits (445), Expect = 3e-43
Identities = 79/94 (84%), Positives = 88/94 (93%)
Frame = -3
Query: 590 IINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 411
IIN+VGVVAG+S AIN+GYQSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQNRTPTIVV+W
Sbjct: 984 IINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1043
Query: 410 SVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 309
++LLASIFSLLWVRIDPF + GPDT+ CGINC
Sbjct: 1044 AILLASIFSLLWVRIDPFTTRVTGPDTQTCGINC 1077
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,205,332
Number of Sequences: 1393205
Number of extensions: 11803903
Number of successful extensions: 28263
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 26814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28200
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
