Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004893A_C01 KMC004893A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187280.1| unknown protein; protein id: At3g06290.1 [Arabi... 37 0.12
ref|XP_213770.1| similar to retinal degeneration B2 homolog (Dro... 36 0.21
pir||T48795 origin recognition complex subunit 2 related protein... 35 0.27
emb|CAB88634.2| related to origin recognition complex subunit 2 ... 35 0.27
dbj|BAC16724.1| MCM(minichromosome maintenance )3-associated pro... 35 0.46
>ref|NP_187280.1| unknown protein; protein id: At3g06290.1 [Arabidopsis thaliana]
gi|6862933|gb|AAF30322.1|AC018907_22 hypothetical protein
[Arabidopsis thaliana]
Length = 1713
Score = 36.6 bits (83), Expect = 0.12
Identities = 28/104 (26%), Positives = 50/104 (47%), Gaps = 10/104 (9%)
Frame = -1
Query: 454 SPLPVNDPPRH--------EEHQHLPQR--DSNDESSNTLDAEINLQHQESLSMKTTSTY 305
SP P +D + ++H+ + + + N E+ +D I + L ++ +
Sbjct: 1616 SPPPYDDKAQRVVETGMLIDDHRDIEESMLEKNREACRGIDLMIT--EDDELGERSWRSK 1673
Query: 304 GLNNAHHGALMNRKPSQEAEKLSQLLEQCNLLQDSIDRKLFPYF 173
G A + R E+E+L +LLE+CN++Q+SI KL YF
Sbjct: 1674 GREAAEKKTIEKR----ESERLDELLEKCNMVQNSIAEKLCIYF 1713
>ref|XP_213770.1| similar to retinal degeneration B2 homolog (Drosophila) [Mus
musculus] [Rattus norvegicus]
Length = 249
Score = 35.8 bits (81), Expect = 0.21
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Frame = -1
Query: 433 PPRHEEHQHLPQ---RDSNDESSNTL-DAEINLQHQESLSMKTTSTYGLNNAHHGALMNR 266
P RH + Q RDS++ S DA+ NLQH+E + K + + N+ LM++
Sbjct: 130 PSRHSISEWRMQSIARDSDESSEEEFFDAQENLQHKEEMYTKDITKWSSND-----LMDK 184
Query: 265 KPSQEAE--------------KLSQLLEQCNLLQDSIDRKLFPYF*W 167
+ E E +++ +EQ N ++ R FP F W
Sbjct: 185 MENPEPEESQDSLYHQSGSEFRVASSVEQLNTIEKKAKRSRFPSFSW 231
>pir||T48795 origin recognition complex subunit 2 related protein [imported] -
Neurospora crassa
Length = 578
Score = 35.4 bits (80), Expect = 0.27
Identities = 26/82 (31%), Positives = 39/82 (46%), Gaps = 3/82 (3%)
Frame = -1
Query: 454 SPLPVNDPPRHEEHQHLPQRDSNDESSNTLDAEINLQHQESLSMKTTSTYGLNNAHHGAL 275
SP P D P HE++ + + SN S+NTL + L H+E S+ + H AL
Sbjct: 226 SPTPPRDLPPHEQYFYQNKPGSNKTSNNTLSSLDLLIHEEYFSLLRNLGQDPHEKHIDAL 285
Query: 274 MNRKPS---QEAEKLSQLLEQC 218
++ + Q A +LSQ C
Sbjct: 286 QSQHAASFPQWAFELSQGFSVC 307
>emb|CAB88634.2| related to origin recognition complex subunit 2 [Neurospora crassa]
gi|28922460|gb|EAA31691.1| hypothetical protein (
(AL353822) related to origin recognition complex subunit
2 [Neurospora crassa] )
Length = 603
Score = 35.4 bits (80), Expect = 0.27
Identities = 26/82 (31%), Positives = 39/82 (46%), Gaps = 3/82 (3%)
Frame = -1
Query: 454 SPLPVNDPPRHEEHQHLPQRDSNDESSNTLDAEINLQHQESLSMKTTSTYGLNNAHHGAL 275
SP P D P HE++ + + SN S+NTL + L H+E S+ + H AL
Sbjct: 226 SPTPPRDLPPHEQYFYQNKPGSNKTSNNTLSSLDLLIHEEYFSLLRNLGQDPHEKHIDAL 285
Query: 274 MNRKPS---QEAEKLSQLLEQC 218
++ + Q A +LSQ C
Sbjct: 286 QSQHAASFPQWAFELSQGFSVC 307
>dbj|BAC16724.1| MCM(minichromosome maintenance )3-associated protein-like (GANP
protein-like) [Oryza sativa (japonica cultivar-group)]
Length = 1791
Score = 34.7 bits (78), Expect = 0.46
Identities = 18/44 (40%), Positives = 25/44 (55%)
Frame = -1
Query: 304 GLNNAHHGALMNRKPSQEAEKLSQLLEQCNLLQDSIDRKLFPYF 173
G+ L + P + +KL++LLEQC+ LQD ID L YF
Sbjct: 1748 GVRMPRRTELRDLVPIERDDKLARLLEQCSKLQDRIDGTLSIYF 1791
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,276,708
Number of Sequences: 1393205
Number of extensions: 7538426
Number of successful extensions: 23194
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 22613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23170
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
