Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004887A_C01 KMC004887A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42806.1| At5g22480 [Arabidopsis thaliana] 125 3e-28
ref|NP_197640.1| zinc finger protein-like; protein id: At5g22480... 125 3e-28
gb|AAM62849.1| zinc finger protein-like [Arabidopsis thaliana] 125 3e-28
dbj|BAB09120.1| zinc finger protein-like [Arabidopsis thaliana] 125 3e-28
dbj|BAB09106.1| zinc finger protein-like [Arabidopsis thaliana] 124 6e-28
>gb|AAO42806.1| At5g22480 [Arabidopsis thaliana]
Length = 493
Score = 125 bits (314), Expect = 3e-28
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = -2
Query: 542 LLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEPNEELGLNDIDTSSAD 363
LLS E+ WTL+LDD LANSFIAP TDD+KDD+QLTFEEYERSW+ NEELGLNDIDTSSAD
Sbjct: 422 LLSFEQPWTLILDDELANSFIAPVTDDIKDDHQLTFEEYERSWDQNEELGLNDIDTSSAD 481
Query: 362 AAYESTNTTK 333
AAYEST TTK
Sbjct: 482 AAYESTETTK 491
>ref|NP_197640.1| zinc finger protein-like; protein id: At5g22480.1, supported by
cDNA: 16392. [Arabidopsis thaliana]
Length = 493
Score = 125 bits (314), Expect = 3e-28
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = -2
Query: 542 LLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEPNEELGLNDIDTSSAD 363
LLS E+ WTL+LDD LANSFIAP TDD+KDD+QLTFEEYERSW+ NEELGLNDIDTSSAD
Sbjct: 422 LLSFEQPWTLILDDELANSFIAPVTDDIKDDHQLTFEEYERSWDQNEELGLNDIDTSSAD 481
Query: 362 AAYESTNTTK 333
AAYEST TTK
Sbjct: 482 AAYESTETTK 491
>gb|AAM62849.1| zinc finger protein-like [Arabidopsis thaliana]
Length = 493
Score = 125 bits (314), Expect = 3e-28
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = -2
Query: 542 LLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEPNEELGLNDIDTSSAD 363
LLS E+ WTL+LDD LANSFIAP TDD+KDD+QLTFEEYERSW+ NEELGLNDIDTSSAD
Sbjct: 422 LLSFEQPWTLILDDELANSFIAPVTDDIKDDHQLTFEEYERSWDQNEELGLNDIDTSSAD 481
Query: 362 AAYESTNTTK 333
AAYEST TTK
Sbjct: 482 AAYESTETTK 491
>dbj|BAB09120.1| zinc finger protein-like [Arabidopsis thaliana]
Length = 452
Score = 125 bits (314), Expect = 3e-28
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = -2
Query: 542 LLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEPNEELGLNDIDTSSAD 363
LLS E+ WTL+LDD LANSFIAP TDD+KDD+QLTFEEYERSW+ NEELGLNDIDTSSAD
Sbjct: 381 LLSFEQPWTLILDDELANSFIAPVTDDIKDDHQLTFEEYERSWDQNEELGLNDIDTSSAD 440
Query: 362 AAYESTNTTK 333
AAYEST TTK
Sbjct: 441 AAYESTETTK 450
Score = 31.2 bits (69), Expect = 8.5
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Frame = -2
Query: 530 EEAWTLVLDDALANSFI----APATDDLKDDNQLTFEEYERSWEPNEELG--LNDIDTSS 369
E ++T +LDD NSFI AP+ D LT + YER+ E LG N
Sbjct: 175 ETSFTFILDDPAGNSFIENPHAPSPDP-----SLTIKFYERTPEQQATLGYVANPSQAGQ 229
Query: 368 ADAAYESTNTTKNE*VLSQAHPCLSSPTSTQNQWREEI*EKRRICVHCDIKETERK 201
++ + + T + PC + + + +E+ C C + +E K
Sbjct: 230 SEGSLGAPVMTFPSTCGACTEPCETRMFKIEIPYFQEVIVMASTCDSCGYRNSELK 285
>dbj|BAB09106.1| zinc finger protein-like [Arabidopsis thaliana]
Length = 465
Score = 124 bits (312), Expect = 6e-28
Identities = 59/70 (84%), Positives = 64/70 (91%)
Frame = -2
Query: 542 LLSLEEAWTLVLDDALANSFIAPATDDLKDDNQLTFEEYERSWEPNEELGLNDIDTSSAD 363
LLSLE+ WTL+LDD LANSFI+P TDD+KDD+QLTFEEYERSWE NEELGLNDIDTSSAD
Sbjct: 394 LLSLEQEWTLILDDELANSFISPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDTSSAD 453
Query: 362 AAYESTNTTK 333
AAYEST TK
Sbjct: 454 AAYESTEPTK 463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,666,836
Number of Sequences: 1393205
Number of extensions: 9022673
Number of successful extensions: 25160
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 24328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25107
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
