Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004886A_C01 KMC004886A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB46864.1| hypothetical protein [Macaca fascicularis] 33 3.1
ref|NP_701194.1| hypothetical protein [Plasmodium falciparum 3D7... 31 9.0
>dbj|BAB46864.1| hypothetical protein [Macaca fascicularis]
Length = 509
Score = 32.7 bits (73), Expect = 3.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 353 RDV*RREHLFVNLPVLCC---HFVKSSAPNPEYRLFHFSTPAAILFTCSSLPPPQNRRNE 183
+DV +R + + + C H V++ APN E F PAA+L+ + P+N +
Sbjct: 429 KDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPAAVLYK-NQTKNPENHEDP 487
Query: 182 TLPRDR 165
L R R
Sbjct: 488 PLKRQR 493
>ref|NP_701194.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496260|gb|AAN35918.1|AE014841_1 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 903
Score = 31.2 bits (69), Expect = 9.0
Identities = 19/57 (33%), Positives = 32/57 (55%)
Frame = -1
Query: 325 SSTSLYSAAIL*RVALLTQSIGYFISPLQLQYFLLVLLYHPLKIEEMKLYQGIDFLL 155
+S S S + + + T++I + L L + +L+LLY LKIE M L Q + ++L
Sbjct: 698 NSHSCVSISTMEIILFFTKNISFVWKILSL-FVILILLYFLLKIETMSLNQSLHYIL 753
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,105,963
Number of Sequences: 1393205
Number of extensions: 10424007
Number of successful extensions: 18874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18869
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
