Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004884A_C01 KMC004884A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34437.1|AF172282_26 unknown protein [Oryza sativa] 56 2e-07
pir||D96502 hypothetical protein F28H19.10 [imported] - Arabidop... 52 3e-06
ref|NP_175051.1| unknown protein; protein id: At1g43850.1, suppo... 52 3e-06
dbj|BAC42895.1| unknown protein [Arabidopsis thaliana] 52 3e-06
pir||T02073 hypothetical protein S25-PR6 - common tobacco gi|117... 47 1e-04
>gb|AAF34437.1|AF172282_26 unknown protein [Oryza sativa]
Length = 933
Score = 56.2 bits (134), Expect = 2e-07
Identities = 38/98 (38%), Positives = 52/98 (52%), Gaps = 28/98 (28%)
Frame = -1
Query: 506 YGTMG-LXPSGMXNGVRQAMANNSV-MNGRIGMASIARD---------QAINHHQ----- 375
+G MG L P+ +G+R A+ANN++ ++GR+GM A D Q + HQ
Sbjct: 835 FGAMGGLGPNHAASGLRTAIANNAMAISGRMGMNHSAHDLSQLGQLQQQQQHQHQHQHQH 894
Query: 374 ------------DLSSQLLSGLGAVNGFSNLPFDWKPS 297
DL +QLLSGL A N F+NL +DWKPS
Sbjct: 895 QQQQQQQQQQQHDLGNQLLSGLRAANSFNNLQYDWKPS 932
>pir||D96502 hypothetical protein F28H19.10 [imported] - Arabidopsis thaliana
gi|7523675|gb|AAF63115.1|AC006423_16 Hypothetical
protein [Arabidopsis thaliana]
Length = 859
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/63 (50%), Positives = 39/63 (61%)
Frame = -1
Query: 494 GLXPSGMXNGVRQAMANNSVMNGRIGMASIARDQAINHHQDLSSQLLSGLGAVNGFSNLP 315
G+ S NG+ NNS+MNGR+GM + RD N QDL +QL LGAVNGF+N
Sbjct: 804 GIGQSMAANGINNINGNNSLMNGRVGM--MVRDP--NGQQDLGNQL---LGAVNGFNN-- 854
Query: 314 FDW 306
FDW
Sbjct: 855 FDW 857
>ref|NP_175051.1| unknown protein; protein id: At1g43850.1, supported by cDNA:
gi_18033921 [Arabidopsis thaliana]
gi|18033922|gb|AAL57277.1| SEUSS transcriptional
co-regulator [Arabidopsis thaliana]
Length = 877
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/63 (50%), Positives = 39/63 (61%)
Frame = -1
Query: 494 GLXPSGMXNGVRQAMANNSVMNGRIGMASIARDQAINHHQDLSSQLLSGLGAVNGFSNLP 315
G+ S NG+ NNS+MNGR+GM + RD N QDL +QL LGAVNGF+N
Sbjct: 822 GIGQSMAANGINNINGNNSLMNGRVGM--MVRDP--NGQQDLGNQL---LGAVNGFNN-- 872
Query: 314 FDW 306
FDW
Sbjct: 873 FDW 875
>dbj|BAC42895.1| unknown protein [Arabidopsis thaliana]
Length = 247
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/63 (50%), Positives = 39/63 (61%)
Frame = -1
Query: 494 GLXPSGMXNGVRQAMANNSVMNGRIGMASIARDQAINHHQDLSSQLLSGLGAVNGFSNLP 315
G+ S NG+ NNS+MNGR+GM + RD N QDL +QL LGAVNGF+N
Sbjct: 192 GIGQSMAANGINNINGNNSLMNGRVGM--MVRDP--NGQQDLGNQL---LGAVNGFNN-- 242
Query: 314 FDW 306
FDW
Sbjct: 243 FDW 245
>pir||T02073 hypothetical protein S25-PR6 - common tobacco
gi|1174199|gb|AAA86652.1| S25-PR6
Length = 193
Score = 47.0 bits (110), Expect = 1e-04
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 4/55 (7%)
Frame = -1
Query: 506 YGTMG--LXPSGMXNGVRQAMANNSV-MNGRIGMASIARDQAIN-HHQDLSSQLL 354
YG MG L + M NG+R A+ N+SV MNGR+GM +AR+Q+++ QDL +QLL
Sbjct: 138 YGNMGNGLSQAAMANGIRAALGNSSVAMNGRVGM-PMAREQSVSQQQQDLGNQLL 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,185,345
Number of Sequences: 1393205
Number of extensions: 9883435
Number of successful extensions: 24899
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24751
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
