Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004883A_C01 KMC004883A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192451.1| UV-damaged DNA binding factor - like protein; p... 138 7e-38
gb|AAL66955.1| putative UV-damaged DNA binding factor [Arabidops... 138 8e-38
pir||T04941 UV-damaged DNA-binding protein homolog F7J7.40 - Ara... 134 7e-36
ref|NP_193842.1| UV-damaged DNA-binding protein- like; protein i... 134 7e-36
dbj|BAB20761.1| UV-damaged DNA binding protein [Oryza sativa (ja... 122 3e-27
>ref|NP_192451.1| UV-damaged DNA binding factor - like protein; protein id: At4g05420.1
[Arabidopsis thaliana] gi|25294328|pir||B85068 UV-damaged
DNA binding factor-like protein [imported] - Arabidopsis
thaliana gi|7267302|emb|CAB81084.1| UV-damaged DNA
binding factor-like protein [Arabidopsis thaliana]
gi|25054828|gb|AAN71904.1| putative UV-damaged DNA
binding factor [Arabidopsis thaliana]
Length = 1088
Score = 138 bits (347), Expect(2) = 7e-38
Identities = 65/76 (85%), Positives = 75/76 (98%)
Frame = -1
Query: 504 QSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDV 325
QS+LRKVIKGVGGLSHEQWRSFNNEK+TAEARNFLDGDLIESFLDL+R+KM+++SK+++V
Sbjct: 1013 QSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNV 1072
Query: 324 SVEELCKRVEELTRLH 277
VEELCKRVEELTRLH
Sbjct: 1073 QVEELCKRVEELTRLH 1088
Score = 40.8 bits (94), Expect(2) = 7e-38
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3
Query: 568 NGVIGVIASLPHEQYVFLEKL 506
NGVIGVIASLP EQY FLEKL
Sbjct: 992 NGVIGVIASLPQEQYTFLEKL 1012
>gb|AAL66955.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana]
Length = 270
Score = 138 bits (347), Expect(2) = 8e-38
Identities = 65/76 (85%), Positives = 75/76 (98%)
Frame = -1
Query: 504 QSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDV 325
QS+LRKVIKGVGGLSHEQWRSFNNEK+TAEARNFLDGDLIESFLDL+R+KM+++SK+++V
Sbjct: 195 QSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNV 254
Query: 324 SVEELCKRVEELTRLH 277
VEELCKRVEELTRLH
Sbjct: 255 QVEELCKRVEELTRLH 270
Score = 40.8 bits (94), Expect(2) = 8e-38
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3
Query: 568 NGVIGVIASLPHEQYVFLEKL 506
NGVIGVIASLP EQY FLEKL
Sbjct: 174 NGVIGVIASLPQEQYTFLEKL 194
>pir||T04941 UV-damaged DNA-binding protein homolog F7J7.40 - Arabidopsis thaliana
gi|2911067|emb|CAA17529.1| UV-damaged DNA-binding
protein-like [Arabidopsis thaliana]
gi|7268907|emb|CAB79110.1| UV-damaged DNA-binding
protein-like [Arabidopsis thaliana]
Length = 1102
Score = 134 bits (338), Expect(2) = 7e-36
Identities = 63/76 (82%), Positives = 72/76 (93%)
Frame = -1
Query: 504 QSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDV 325
Q++LRKVIKGVGGLSHEQWRSFNNEK+TAEA+ +LDGDLIESFLDL+R KM+E+SK +DV
Sbjct: 1027 QTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDV 1086
Query: 324 SVEELCKRVEELTRLH 277
VEELCKRVEELTRLH
Sbjct: 1087 QVEELCKRVEELTRLH 1102
Score = 37.7 bits (86), Expect(2) = 7e-36
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -3
Query: 568 NGVIGVIASLPHEQYVFLEKL 506
+G+IGVIASLP EQY FLEKL
Sbjct: 1006 SGMIGVIASLPQEQYAFLEKL 1026
>ref|NP_193842.1| UV-damaged DNA-binding protein- like; protein id: At4g21100.1
[Arabidopsis thaliana]
Length = 1088
Score = 134 bits (338), Expect(2) = 7e-36
Identities = 63/76 (82%), Positives = 72/76 (93%)
Frame = -1
Query: 504 QSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDV 325
Q++LRKVIKGVGGLSHEQWRSFNNEK+TAEA+ +LDGDLIESFLDL+R KM+E+SK +DV
Sbjct: 1013 QTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDV 1072
Query: 324 SVEELCKRVEELTRLH 277
VEELCKRVEELTRLH
Sbjct: 1073 QVEELCKRVEELTRLH 1088
Score = 37.7 bits (86), Expect(2) = 7e-36
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -3
Query: 568 NGVIGVIASLPHEQYVFLEKL 506
+G+IGVIASLP EQY FLEKL
Sbjct: 992 SGMIGVIASLPQEQYAFLEKL 1012
>dbj|BAB20761.1| UV-damaged DNA binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 1090
Score = 122 bits (306), Expect = 3e-27
Identities = 60/76 (78%), Positives = 68/76 (88%)
Frame = -1
Query: 504 QSNLRKVIKGVGGLSHEQWRSFNNEKKTAEARNFLDGDLIESFLDLNRSKMDEVSKALDV 325
QS L K IKGVG LSHEQWRSF+N+KKT+EARNFLDGDLIESFLDL+R+KM+EV+K + V
Sbjct: 1015 QSTLVKFIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGV 1074
Query: 324 SVEELCKRVEELTRLH 277
VEEL KRVEELTRLH
Sbjct: 1075 PVEELSKRVEELTRLH 1090
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/31 (77%), Positives = 26/31 (83%), Gaps = 3/31 (9%)
Frame = -3
Query: 568 NGVIGVIASLPHEQYVFLEKLP---VKFEEG 485
NGVIG+IASLPHEQYVFLEKL VKF +G
Sbjct: 994 NGVIGIIASLPHEQYVFLEKLQSTLVKFIKG 1024
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,329,605
Number of Sequences: 1393205
Number of extensions: 9945835
Number of successful extensions: 28555
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 27657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28514
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
