Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004881A_C01 KMC004881A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173236.1| hypothetical protein; protein id: At1g17940.1 [... 45 4e-04
pir||F86314 protein F2H15.16 [imported] - Arabidopsis thaliana g... 45 4e-04
ref|NP_177482.1| hypothetical protein; protein id: At1g73390.1, ... 45 4e-04
ref|NP_508005.1| Predicted CDS, putative membrane protein family... 33 1.4
ref|NP_176031.1| RNA pseudouridylate synthase, putative; protein... 31 7.0
>ref|NP_173236.1| hypothetical protein; protein id: At1g17940.1 [Arabidopsis
thaliana]
Length = 394
Score = 45.4 bits (106), Expect = 4e-04
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = -1
Query: 496 NCDLYCYERIMEIAPTFPDFSLALKP 419
N DLY YE+IME APT PDF+LALKP
Sbjct: 358 NRDLYSYEKIMETAPTLPDFALALKP 383
>pir||F86314 protein F2H15.16 [imported] - Arabidopsis thaliana
gi|9665071|gb|AAF97273.1|AC034106_16 F2H15.16
[Arabidopsis thaliana]
Length = 405
Score = 45.4 bits (106), Expect = 4e-04
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = -1
Query: 496 NCDLYCYERIMEIAPTFPDFSLALKP 419
N DLY YE+IME APT PDF+LALKP
Sbjct: 369 NRDLYSYEKIMETAPTLPDFALALKP 394
>ref|NP_177482.1| hypothetical protein; protein id: At1g73390.1, supported by cDNA:
gi_18252172 [Arabidopsis thaliana]
gi|25372890|pir||E96760 hypothetical protein T9L24.40
[imported] - Arabidopsis thaliana
gi|11120790|gb|AAG30970.1|AC012396_6 hypothetical
protein [Arabidopsis thaliana]
gi|18252173|gb|AAL61919.1| unknown protein [Arabidopsis
thaliana]
Length = 419
Score = 45.4 bits (106), Expect = 4e-04
Identities = 20/26 (76%), Positives = 22/26 (83%)
Frame = -1
Query: 496 NCDLYCYERIMEIAPTFPDFSLALKP 419
N DLY YE+IME APT PDF+LALKP
Sbjct: 368 NRDLYSYEKIMETAPTLPDFALALKP 393
>ref|NP_508005.1| Predicted CDS, putative membrane protein family member, with at
least 3 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|6425210|emb|CAB60333.1|
Hypothetical protein W07A8.5 [Caenorhabditis elegans]
Length = 328
Score = 33.5 bits (75), Expect = 1.4
Identities = 21/48 (43%), Positives = 27/48 (55%)
Frame = +1
Query: 304 SLRSENYFYLIIFTLEMVRKSFFPFYVLCSPTWRKLIFGASGPRKNQG 447
S+RS YFY F LE + F Y + SP+ RK + G S P+KN G
Sbjct: 270 SIRSA-YFY---FRLETICAITFFVYFMESPSIRKTLLGRSDPKKNSG 313
>ref|NP_176031.1| RNA pseudouridylate synthase, putative; protein id: At1g56345.1
[Arabidopsis thaliana]
gi|12321745|gb|AAG50905.1|AC069159_6 RNA pseudouridylate
synthase, putative [Arabidopsis thaliana]
Length = 254
Score = 31.2 bits (69), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 340 FTLEMVRKSFFPFYVLCSPTWRKLIFGASGPRKNQGRWVLF 462
FT +RKS+ + SP WR++ + R G W ++
Sbjct: 75 FTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVY 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,803,447
Number of Sequences: 1393205
Number of extensions: 9331984
Number of successful extensions: 17096
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17089
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
