Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004880A_C01 KMC004880A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00099243.1| hypothetical protein [Desulfitobacterium hafni... 34 1.4
ref|NP_524761.1| proximal to raf CG2841-PB gi|24639337|ref|NP_72... 32 5.5
ref|NP_810265.1| putative glycosyltransferase HI1698 [Bacteroide... 31 9.4
>gb|ZP_00099243.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 320
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Frame = +1
Query: 214 FLSPGQQALHSKNYEPSYIVIS---L*LPIYEPPKKKHPRPLTPRKEL 348
F P + + KN +PS + + L LP+Y+PPK K P L KEL
Sbjct: 30 FTQPDRPSGRGKNLKPSPVKTAAQELGLPVYQPPKVKSPESLEILKEL 77
>ref|NP_524761.1| proximal to raf CG2841-PB gi|24639337|ref|NP_726808.1| proximal to
raf CG2841-PA gi|24639340|ref|NP_726809.1| proximal to
raf CG2841-PC gi|6911911|emb|CAB72240.1|
/prediction=(method:''genscan'', version:''1.0'',
score:''314.45'')~/prediction=(method:''genefinder'',
version:''084'')~/match=(desc:''GH02860.5prime GH
Drosophila melanogaster head pOT2 Drosophila melanogaster
cDNA clone GH02860 5prime, mRNA sequence'',
species:''Drosophila melanogaster (fruit fly)'',
ranges:(query:25045..25290,
target:EMBL::AI064644:369..124, score:''1221.00''),
(query:24786..24952, target:EMBL::AI064644:535..369,
score:''817.00'')), method:''blastn'',
version:''1.4.9'')~/match=(desc:'>
gi|22831570|gb|AAF45776.2| CG2841-PA [Drosophila
melanogaster] gi|22831571|gb|AAN09074.1| CG2841-PB
[Drosophila melanogaster] gi|22831572|gb|AAN09075.1|
CG2841-PC [Drosophila melanogaster]
Length = 1234
Score = 32.0 bits (71), Expect = 5.5
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +1
Query: 154 SLDDHVSSVHEMTILMHHFQFLSPGQQALHSKNYEPSYIVISL*LPIYEPPKKKHPRPLT 333
SL V SV E + +H + + +++ ++ + S++++S P P KK P P
Sbjct: 785 SLPPAVKSVEEQAVSLHQKEIVVQ-KESPPLESMKESFVIVSKMSP---PAVKKVPDPF- 839
Query: 334 PRKELVSTLQSYYEKKQLNLFYP*APASVVTP 429
P+ E V S E Q + P PA+ V+P
Sbjct: 840 PKVEAVKEESSGNESSQSTITPPNTPATPVSP 871
>ref|NP_810265.1| putative glycosyltransferase HI1698 [Bacteroides thetaiotaomicron
VPI-5482] gi|29338659|gb|AAO76459.1| putative
glycosyltransferase HI1698 [Bacteroides thetaiotaomicron
VPI-5482]
Length = 389
Score = 31.2 bits (69), Expect = 9.4
Identities = 14/46 (30%), Positives = 25/46 (53%)
Frame = +3
Query: 369 LRKKAVELVLSMSPCFCGHSIILNLVKPGAKCNYMLKYQSPSLILR 506
L K ++++++M P +C I+N K KC Y+++Y S R
Sbjct: 70 LINKDIDIIVNMRPTYCVG--IINKAKADLKCKYIIEYHSTPFYAR 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,412,600
Number of Sequences: 1393205
Number of extensions: 9232962
Number of successful extensions: 20347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20333
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
