Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004879A_C01 KMC004879A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00044716.1| hypothetical protein [Magnetococcus sp. MC-1] 33 2.0
ref|NP_572274.1| CG3016-PA [Drosophila melanogaster] gi|7290647|... 31 7.7
>gb|ZP_00044716.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 464
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/71 (28%), Positives = 32/71 (44%)
Frame = +3
Query: 195 MGLSESVVISAMLLKIFNCTESRLAIFFPQQSQSKNF*RNLVTHFITEHTSSKESHEPHI 374
+GLS + + A+L+ + T SRL +P+ H + H + H PHI
Sbjct: 365 LGLSVTFALLALLIAVSVYTASRL---WPRHEP----------HQLNHHHDATAHHHPHI 411
Query: 375 ADLHRRANHSP 407
D H + +H P
Sbjct: 412 HDAHHQHHHHP 422
>ref|NP_572274.1| CG3016-PA [Drosophila melanogaster] gi|7290647|gb|AAF46096.1|
CG3016-PA [Drosophila melanogaster]
gi|17862634|gb|AAL39794.1| LD41827p [Drosophila
melanogaster]
Length = 558
Score = 31.2 bits (69), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 346 HQRSHMSHILLTCIDEQTIAPVPL 417
H + H+LLTC++E+ I P PL
Sbjct: 124 HDAHELFHVLLTCLEEEAIRPQPL 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,368,390
Number of Sequences: 1393205
Number of extensions: 8214730
Number of successful extensions: 16294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16291
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
