Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004878A_C02 KMC004878A_c02
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189016.1| unknown protein; protein id: At3g23740.1 [Arabi... 44 0.001
dbj|BAB01850.1| emb|CAB10191.1~gene_id:MYM9.8~similar to unknown... 44 0.001
gb|AAG34770.1| NADH dehydrogenase subunit F [Cobaea scandens] 33 2.2
ref|NP_704786.1| splicesome-associated protein, putative [Plasmo... 32 5.0
ref|NP_077656.1| EsV-1-171 [Ectocarpus siliculosus virus] gi|131... 32 6.5
>ref|NP_189016.1| unknown protein; protein id: At3g23740.1 [Arabidopsis thaliana]
Length = 542
Score = 44.3 bits (103), Expect = 0.001
Identities = 30/80 (37%), Positives = 36/80 (44%)
Frame = -1
Query: 541 YISQVKEACRKAYAAEQLAKERLSMMKDDLSIHCRITVCAQL*YPKLVPPIEQLAYFSLF 362
Y SQ EA ++A A +LAK RL M DDL IH RI
Sbjct: 474 YKSQAGEASKRACEAAELAKSRLHQMNDDLQIHYRI------------------------ 509
Query: 361 VQNLQRPRVRFADHVQEKII 302
N QR RV+FA ++ EK I
Sbjct: 510 -PNEQRARVKFAHYIHEKTI 528
>dbj|BAB01850.1| emb|CAB10191.1~gene_id:MYM9.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 566
Score = 44.3 bits (103), Expect = 0.001
Identities = 30/80 (37%), Positives = 36/80 (44%)
Frame = -1
Query: 541 YISQVKEACRKAYAAEQLAKERLSMMKDDLSIHCRITVCAQL*YPKLVPPIEQLAYFSLF 362
Y SQ EA ++A A +LAK RL M DDL IH RI
Sbjct: 498 YKSQAGEASKRACEAAELAKSRLHQMNDDLQIHYRI------------------------ 533
Query: 361 VQNLQRPRVRFADHVQEKII 302
N QR RV+FA ++ EK I
Sbjct: 534 -PNEQRARVKFAHYIHEKTI 552
>gb|AAG34770.1| NADH dehydrogenase subunit F [Cobaea scandens]
Length = 742
Score = 33.1 bits (74), Expect = 2.2
Identities = 23/89 (25%), Positives = 45/89 (49%)
Frame = +1
Query: 64 QNVFTVTNKTKIGLKVELGEDVSPFLPQFSFHQHYSSAGHSFSKYHITKSIVFHVQVKYS 243
QN + + + KIG K LG+++ F+ +S+++ Y A ++ S +T I Q+ +
Sbjct: 633 QNFYLINSFVKIGSKRILGDNIKTFIYDWSYNRGYIDAFYAAS---LTVGIRGLAQLTHF 689
Query: 244 SSAETIAGVRCG*PFICVL**FFLGHDLQ 330
+ I G+ G F+ FF+G ++
Sbjct: 690 FDRQVIDGITNGVGFLS----FFVGEGIK 714
>ref|NP_704786.1| splicesome-associated protein, putative [Plasmodium falciparum 3D7]
gi|23505148|emb|CAD51929.1| splicesome-associated
protein, putative [Plasmodium falciparum 3D7]
Length = 589
Score = 32.0 bits (71), Expect = 5.0
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = -1
Query: 544 HYISQVKEACRKAYAAEQLAKERLSMMKDDLSIHCRITVCAQL*YPKLVPPIEQLAYFSL 365
+Y + +K+ K Y EQL + + ++ K+D+++ R QL Y ++ I Q
Sbjct: 310 NYDNDLKKYLNKKYTVEQLEEIKKNIEKEDMNL-ARCEYLIQL-YANILNKIIQRT---- 363
Query: 364 FVQNLQRPRVRFADHVQEKIIK 299
+QN+QR + D +Q+K K
Sbjct: 364 -IQNIQRKQAYTIDEIQKKKYK 384
>ref|NP_077656.1| EsV-1-171 [Ectocarpus siliculosus virus]
gi|13177441|gb|AAK14585.1|AF204951_170 EsV-1-171
[Ectocarpus siliculosus virus]
Length = 1233
Score = 31.6 bits (70), Expect = 6.5
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 342 QGLDLQIMSKKKSSKDADKWLTTPYTSYRLSTGTILYLHVKHNTLGYVVLGK-AMSGGRV 166
+ L+ QI +KK SSK+A +W Y+ +T +I + G ++ GK + R+
Sbjct: 229 KALERQIKAKKISSKNASEWKRNLERKYKATTKSIDSIRKS----GIMIEGKISAEKRRI 284
Query: 165 MLVKRKLREKGR 130
+ VK++ EK R
Sbjct: 285 VAVKKQSLEKAR 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,352,671
Number of Sequences: 1393205
Number of extensions: 9011181
Number of successful extensions: 24311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24309
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
