Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004875A_C01 KMC004875A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91511.1| ethylene responsive element binding protein, puta... 86 3e-16
ref|NP_188961.1| hypothetical protein; protein id: At3g23200.1 [... 86 3e-16
pir||T45925 hypothetical protein F5K20.150 - Arabidopsis thalian... 66 4e-10
ref|NP_566990.1| putative protein; protein id: At3g53850.1, supp... 66 4e-10
ref|NP_195826.1| putative protein; protein id: At5g02060.1 [Arab... 60 3e-08
>gb|AAM91511.1| ethylene responsive element binding protein, putative [Arabidopsis
thaliana]
Length = 152
Score = 85.9 bits (211), Expect = 3e-16
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = -1
Query: 500 VTAILSLAAASSSGGITVLYFHDLGHCRFGEGCRKYQISVALAFLSWIPISISSLIMLWI 321
VT+ LSLA ASSS GITVLYF DLG C F C KYQ+SVALAFL WI I++SSL LW+
Sbjct: 89 VTSTLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWL 148
Query: 320 LAA 312
LA+
Sbjct: 149 LAS 151
>ref|NP_188961.1| hypothetical protein; protein id: At3g23200.1 [Arabidopsis
thaliana]
Length = 125
Score = 85.9 bits (211), Expect = 3e-16
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = -1
Query: 500 VTAILSLAAASSSGGITVLYFHDLGHCRFGEGCRKYQISVALAFLSWIPISISSLIMLWI 321
VT+ LSLA ASSS GITVLYF DLG C F C KYQ+SVALAFL WI I++SSL LW+
Sbjct: 62 VTSTLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWL 121
Query: 320 LAA 312
LA+
Sbjct: 122 LAS 124
>pir||T45925 hypothetical protein F5K20.150 - Arabidopsis thaliana
gi|7630005|emb|CAB88347.1| putative protein [Arabidopsis
thaliana]
Length = 176
Score = 65.9 bits (159), Expect = 4e-10
Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Frame = -1
Query: 500 VTAILSLAAASSSGGITVLYFHDLGHCRFGEG--CRKYQISVALAFLSWIPISISSLIML 327
VTA+LSLAAA SS G+ VLY D+ +C C +Y+++VAL+F++WI I++SS +
Sbjct: 111 VTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTF 170
Query: 326 WILAA 312
WILA+
Sbjct: 171 WILAS 175
>ref|NP_566990.1| putative protein; protein id: At3g53850.1, supported by cDNA:
gi_15724235 [Arabidopsis thaliana]
gi|15724236|gb|AAL06511.1|AF412058_1 AT4g31460/F3L17_30
[Arabidopsis thaliana] gi|21464571|gb|AAM52240.1|
AT4g31460/F3L17_30 [Arabidopsis thaliana]
Length = 154
Score = 65.9 bits (159), Expect = 4e-10
Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Frame = -1
Query: 500 VTAILSLAAASSSGGITVLYFHDLGHCRFGEG--CRKYQISVALAFLSWIPISISSLIML 327
VTA+LSLAAA SS G+ VLY D+ +C C +Y+++VAL+F++WI I++SS +
Sbjct: 89 VTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTF 148
Query: 326 WILAA 312
WILA+
Sbjct: 149 WILAS 153
>ref|NP_195826.1| putative protein; protein id: At5g02060.1 [Arabidopsis thaliana]
gi|11358398|pir||T48227 hypothetical protein T7H20.110 -
Arabidopsis thaliana gi|7340680|emb|CAB82979.1| putative
protein [Arabidopsis thaliana]
Length = 152
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/63 (50%), Positives = 41/63 (64%), Gaps = 2/63 (3%)
Frame = -1
Query: 500 VTAILSLAAASSSGGITVLYFHDLGHCRF--GEGCRKYQISVALAFLSWIPISISSLIML 327
VTA+L+LAAA SS G+TVL+ D CR C ++QISV L+F +W +ISS M
Sbjct: 89 VTALLALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMF 148
Query: 326 WIL 318
WIL
Sbjct: 149 WIL 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,197,733
Number of Sequences: 1393205
Number of extensions: 8974176
Number of successful extensions: 24031
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24022
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
