Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004873A_C01 KMC004873A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567820.1| Expressed protein; protein id: At4g29060.1, sup... 137 1e-31
gb|ZP_00104740.1| hypothetical protein [Prochlorococcus marinus ... 114 7e-25
ref|NP_441466.1| elongation factor TS [Synechocystis sp. PCC 680... 109 2e-23
ref|ZP_00115410.1| hypothetical protein [Synechococcus sp. WH 8102] 104 7e-22
gb|ZP_00113026.1| hypothetical protein [Prochlorococcus marinus ... 103 9e-22
>ref|NP_567820.1| Expressed protein; protein id: At4g29060.1, supported by cDNA:
gi_15983772 [Arabidopsis thaliana] gi|7485750|pir||T08961
hypothetical protein F19B15.90 - Arabidopsis thaliana
gi|4972052|emb|CAB43920.1| putative protein [Arabidopsis
thaliana] gi|7269804|emb|CAB79664.1| putative protein
[Arabidopsis thaliana] gi|15983773|gb|AAL10483.1|
AT4g29060/F19B15_90 [Arabidopsis thaliana]
Length = 953
Score = 137 bits (344), Expect = 1e-31
Identities = 68/76 (89%), Positives = 74/76 (96%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EKEIEMQREDLLSKPENIREKIVEGR+SKRLGE ALLEQP+IKDDSVLVKDLVKQ++A +
Sbjct: 876 EKEIEMQREDLLSKPENIREKIVEGRISKRLGEWALLEQPYIKDDSVLVKDLVKQTVATL 935
Query: 337 GENIKVRRFVRFTLGE 290
GENIKVRRFV+FTLGE
Sbjct: 936 GENIKVRRFVKFTLGE 951
Score = 129 bits (325), Expect = 2e-29
Identities = 67/101 (66%), Positives = 78/101 (76%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EKEIEMQ+EDLLSKPE IREKIV+GR+ KRL LALLEQP+IKDD V+VKDLVKQ IA I
Sbjct: 638 EKEIEMQKEDLLSKPEQIREKIVDGRIKKRLDSLALLEQPYIKDDKVIVKDLVKQRIATI 697
Query: 337 GENIKVRRFVRFTLGETAEKETITA*LKIGQSLCVTPA*KE 215
GENIKV+RFVR+TLGE EK++ ++ P KE
Sbjct: 698 GENIKVKRFVRYTLGEGLEKKSQDFAAEVAAQTAAKPKAKE 738
>gb|ZP_00104740.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 218
Score = 114 bits (285), Expect = 7e-25
Identities = 56/80 (70%), Positives = 67/80 (83%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EK+IEM R+DL KPENI+EKIVEGR++KRL EL LL QP+IKD ++ V+DLVKQ+ A I
Sbjct: 124 EKQIEMGRDDLSGKPENIKEKIVEGRIAKRLNELVLLSQPYIKDSALTVEDLVKQAAAKI 183
Query: 337 GENIKVRRFVRFTLGETAEK 278
GENIKVRRF R+TLGE EK
Sbjct: 184 GENIKVRRFTRYTLGEGIEK 203
>ref|NP_441466.1| elongation factor TS [Synechocystis sp. PCC 6803]
gi|2494280|sp|P74070|EFTS_SYNY3 Elongation factor Ts
(EF-Ts) gi|7443447|pir||S75585 translation elongation
factor EF-Ts - Synechocystis sp. (strain PCC 6803)
gi|1653231|dbj|BAA18146.1| elongation factor TS
[Synechocystis sp. PCC 6803]
Length = 218
Score = 109 bits (272), Expect = 2e-23
Identities = 52/80 (65%), Positives = 68/80 (85%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EKEIEM R+DL KP NI+EKIV+GR+ KRL EL+LL+QP+IKD ++ +++LVKQ+IA +
Sbjct: 124 EKEIEMGRDDLGKKPANIKEKIVQGRIDKRLKELSLLDQPYIKDQNLTIEELVKQAIAEL 183
Query: 337 GENIKVRRFVRFTLGETAEK 278
GENI+VRRF+RF LGE EK
Sbjct: 184 GENIQVRRFIRFNLGEGIEK 203
>ref|ZP_00115410.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 219
Score = 104 bits (259), Expect = 7e-22
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EK IEM R+DL KPE ++ KIVEGR+ KRL ELAL+EQPFIKD S+ V +LVKQ+ I
Sbjct: 124 EKAIEMGRDDLDGKPEQMKVKIVEGRIGKRLKELALMEQPFIKDSSITVTELVKQTAGKI 183
Query: 337 GENIKVRRFVRFTLGETAEKE 275
GEN++VRRF R+TLGE E E
Sbjct: 184 GENVQVRRFTRYTLGEGIEVE 204
>gb|ZP_00113026.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 218
Score = 103 bits (258), Expect = 9e-22
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = -1
Query: 517 EKEIEMQREDLLSKPENIREKIVEGRVSKRLGELALLEQPFIKDDSVLVKDLVKQSIAAI 338
EK IEM R+DL KPE I+ KIVEGR+ KRL EL LLEQPFI+D S+ V +LVKQ I
Sbjct: 124 EKSIEMGRDDLSGKPEQIKAKIVEGRIGKRLKELVLLEQPFIRDSSMTVAELVKQVAGKI 183
Query: 337 GENIKVRRFVRFTLGETAE 281
GENIKVRRF R+TLGE E
Sbjct: 184 GENIKVRRFTRYTLGEGIE 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,050,411
Number of Sequences: 1393205
Number of extensions: 8955433
Number of successful extensions: 21038
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 20503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21000
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
