Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004870A_C01 KMC004870A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA74101.1| laccase [Populus balsamifera subsp. trichocarpa] 69 2e-11
emb|CAC14718.1| laccase [Populus balsamifera subsp. trichocarpa] 69 2e-11
pir||T01240 laccase (EC 1.10.3.2) F16M14.1 - Arabidopsis thaliana 69 3e-11
ref|NP_565881.1| laccase (diphenol oxidase), putative; protein i... 69 3e-11
ref|NP_200699.1| laccase (diphenol oxidase), putative; protein i... 68 5e-11
>emb|CAA74101.1| laccase [Populus balsamifera subsp. trichocarpa]
Length = 407
Score = 69.3 bits (168), Expect = 2e-11
Identities = 27/43 (62%), Positives = 33/43 (75%)
Frame = -3
Query: 449 WFVHCHVDDHNVWGLTTVFLVENGPTPSTSLLPPPADLPKC*T 321
WF+HCH++ H WGL FLV+NG P+ SLLPPP+DLPKC T
Sbjct: 364 WFMHCHLEVHTTWGLKMAFLVDNGKGPNESLLPPPSDLPKCLT 406
>emb|CAC14718.1| laccase [Populus balsamifera subsp. trichocarpa]
Length = 396
Score = 69.3 bits (168), Expect = 2e-11
Identities = 27/43 (62%), Positives = 33/43 (75%)
Frame = -3
Query: 449 WFVHCHVDDHNVWGLTTVFLVENGPTPSTSLLPPPADLPKC*T 321
WF+HCH++ H WGL FLV+NG P+ SLLPPP+DLPKC T
Sbjct: 353 WFMHCHLEVHTTWGLKMAFLVDNGKGPNESLLPPPSDLPKCLT 395
>pir||T01240 laccase (EC 1.10.3.2) F16M14.1 - Arabidopsis thaliana
Length = 554
Score = 68.6 bits (166), Expect = 3e-11
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -3
Query: 449 WFVHCHVDDHNVWGLTTVFLVENGPTPSTSLLPPPADLPKC 327
WF+HCH++ H WGL FLVENG P+ S+LPPP DLPKC
Sbjct: 514 WFMHCHLEVHTTWGLKMAFLVENGKGPNQSILPPPKDLPKC 554
>ref|NP_565881.1| laccase (diphenol oxidase), putative; protein id: At2g38080.1,
supported by cDNA: gi_15450602, supported by cDNA:
gi_17380633, supported by cDNA: gi_17473885 [Arabidopsis
thaliana] gi|15450603|gb|AAK96573.1| At2g38080/T8P21.
[Arabidopsis thaliana] gi|17380634|gb|AAL36080.1|
At2g38080/T8P21. [Arabidopsis thaliana]
gi|17473886|gb|AAL38363.1| putative diphenol oxidase
[Arabidopsis thaliana] gi|20196985|gb|AAC27158.2|
putative diphenol oxidase [Arabidopsis thaliana]
gi|21387103|gb|AAM47955.1| putative diphenol oxidase
[Arabidopsis thaliana]
Length = 558
Score = 68.6 bits (166), Expect = 3e-11
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -3
Query: 449 WFVHCHVDDHNVWGLTTVFLVENGPTPSTSLLPPPADLPKC 327
WF+HCH++ H WGL FLVENG P+ S+LPPP DLPKC
Sbjct: 518 WFMHCHLEVHTTWGLKMAFLVENGKGPNQSILPPPKDLPKC 558
>ref|NP_200699.1| laccase (diphenol oxidase), putative; protein id: At5g58910.1
[Arabidopsis thaliana]
Length = 523
Score = 67.8 bits (164), Expect = 5e-11
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -3
Query: 449 WFVHCHVDDHNVWGLTTVFLVENGPTPSTSLLPPPADLPKC 327
WF+HCH++ H WGL F+V+NG P SLLPPPADLPKC
Sbjct: 483 WFMHCHLELHTTWGLKMAFVVDNGHGPDQSLLPPPADLPKC 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,631,746
Number of Sequences: 1393205
Number of extensions: 7853862
Number of successful extensions: 17760
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 17246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17753
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
