Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004868A_C01 KMC004868A_c01
(846 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK59254.1| HMG box transcription factor Sox9a [Monopterus al... 37 0.28
gb|AAL32172.1|AF329945_3 transcription factor SOX9 [Takifugu rub... 37 0.48
dbj|BAA24365.1| SOX9 [Oncorhynchus mykiss] 33 6.9
ref|NP_571718.1| SRY-box containing gene 9a [Danio rerio] gi|996... 32 9.0
>gb|AAK59254.1| HMG box transcription factor Sox9a [Monopterus albus]
Length = 482
Score = 37.4 bits (85), Expect = 0.28
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +1
Query: 418 HK*SHKFYKYSPPKSKSAQNGFQKTSYARQTPCDPHGRESHKKLIVGNLPCPKIQLMNQS 597
HK H YKY P + KS +NG + + QT P+ K L + P + ++
Sbjct: 164 HKKDHPDYKYQPRRRKSVKNGQNEPEDSEQTHISPNA--IFKALQQADSPASSMGEVHSP 221
Query: 598 YDHDNQNQQL*PPISYTT 651
DH Q+Q PP TT
Sbjct: 222 GDHSGQSQG--PPTPPTT 237
>gb|AAL32172.1|AF329945_3 transcription factor SOX9 [Takifugu rubripes]
Length = 484
Score = 36.6 bits (83), Expect = 0.48
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = +1
Query: 418 HK*SHKFYKYSPPKSKSAQNGFQKTSYARQTPCDPHGRESHKKLIVGNLPCPKIQLMNQS 597
HK H YKY P + KS +NG QT P+ K L + P + ++
Sbjct: 164 HKKDHPDYKYQPRRRKSVKNGQNDPEDGEQTHISPNA--IFKALQQADSPASSLGEVHSP 221
Query: 598 YDHDNQNQQL*PPISYTT 651
DH Q+Q PP TT
Sbjct: 222 GDHSGQSQG--PPTPPTT 237
>dbj|BAA24365.1| SOX9 [Oncorhynchus mykiss]
Length = 488
Score = 32.7 bits (73), Expect = 6.9
Identities = 23/78 (29%), Positives = 33/78 (41%)
Frame = +1
Query: 418 HK*SHKFYKYSPPKSKSAQNGFQKTSYARQTPCDPHGRESHKKLIVGNLPCPKIQLMNQS 597
HK H YKY P + KS +NG + QT + K L + P + ++
Sbjct: 168 HKKDHPDYKYQPRRRKSVKNGQSEPEDGEQTHIS--SGDIFKALQQADSPASSMGEVHSP 225
Query: 598 YDHDNQNQQL*PPISYTT 651
+H Q+Q PP TT
Sbjct: 226 SEHSGQSQG--PPTPPTT 241
>ref|NP_571718.1| SRY-box containing gene 9a [Danio rerio]
gi|9964081|gb|AAG09814.1|AF277096_1 HMG box
transcription factor Sox9a [Danio rerio]
gi|24429611|gb|AAM13695.1| transcription factor sox9a
[Danio rerio] gi|24429613|gb|AAM13696.1| transcription
factor sox9a [Danio rerio]
Length = 462
Score = 32.3 bits (72), Expect = 9.0
Identities = 24/79 (30%), Positives = 35/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 418 HK*SHKFYKYSPPKSKSAQNG-FQKTSYARQTPCDPHGRESHKKLIVGNLPCPKIQLMNQ 594
HK H YKY P + KS +NG + + QT P+ K L + P + ++
Sbjct: 167 HKKDHPDYKYQPRRRKSVKNGQSESEDGSEQTHISPNA--IFKALQQADSPASSMGEVHS 224
Query: 595 SYDHDNQNQQL*PPISYTT 651
+H Q+Q PP TT
Sbjct: 225 PSEHSGQSQG--PPTPPTT 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 699,995,204
Number of Sequences: 1393205
Number of extensions: 15444938
Number of successful extensions: 36306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36278
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
