>KMC004867A_C01 KMC004867A_c01
agataaaccccctaaaacattgaATTAATTAGGCTTAAATATGCTTTGGCTCCCTCTAAA
ATAAGGATATTTTTGGTTTAGGCCCCTCTAAATAAGGTATACATCACTAAATGCAAAATC
ATACTGAATACAAAATTATTCTGTCGTCACCTTACATCGTTTAAAATGACCTAAACCAAA
AAACTATGATTTTAGAGGGACCTAAGATAGGATACCTCTAAAATATGTCACGTCAATGTC
TGTTATGTAAATGTAACAACATGCGCTTATCCTAATTGCCTTTATGACATTAATTGTGGA
TAACACTCCATCCTCACCACTGGATAAATTATGAGTACTGATTTCCAAATTCTTCACACC
TGTGATTCAGACTTTCTTAACTTGCCATTTGCATCTTCAGTAAGCTCTTTTCCAACCACC
TTCAATTTTCTTTTCACACACTTACAAACAGCAGACTGGTTGCTACTTGCTACTATCTCC
ATATCCAACAGTATCAACAATGTTCTTCATCAACATCTGTGACCATTGTTGACTTGGTAC
TTGTTATCTCAGAGAAGAAACGTGACACAATCTCAGGATCAAAACAAATTCAAAGAACTT
CATAGCAAGGATAACCCTTATATG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004867A_C01 KMC004867A_c01
         (624 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA33599.1| unknown [Vibrio cholerae]                              32  5.2
emb|CAA69115.1| ORF54x4 [Vibrio cholerae]                              32  5.2
ref|NP_191083.1| disease resistance response protein-related; pr...    32  8.8

>dbj|BAA33599.1| unknown [Vibrio cholerae]
          Length = 479

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 26/96 (27%), Positives = 39/96 (40%)
 Frame = +2

Query: 212 IPLKYVTSMSVM*M*QHALILIAFMTLIVDNTPSSPLDKL*VLISKFFTPVIQTFLTCHL 391
           + L Y+T++S+M      L+ I F                     +F  P I + LT  L
Sbjct: 397 LALSYLTTLSIMFYNMKKLLSIRF---------------------EFLNPAIASLLTLPL 435

Query: 392 HLQ*ALFQPPSIFFSHTYKQQTGCYLLLSPYPTVST 499
            +   L   P++F S  +    G YLLL  YP + T
Sbjct: 436 LVMHLLSITPTLFNSFLFSLLGGFYLLLIQYPFLKT 471

>emb|CAA69115.1| ORF54x4 [Vibrio cholerae]
          Length = 478

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 26/96 (27%), Positives = 39/96 (40%)
 Frame = +2

Query: 212 IPLKYVTSMSVM*M*QHALILIAFMTLIVDNTPSSPLDKL*VLISKFFTPVIQTFLTCHL 391
           + L Y+T++S+M      L+ I F                     +F  P I + LT  L
Sbjct: 396 LALSYLTTLSIMFYNMKKLLSIRF---------------------EFLNPAIASLLTLPL 434

Query: 392 HLQ*ALFQPPSIFFSHTYKQQTGCYLLLSPYPTVST 499
            +   L   P++F S  +    G YLLL  YP + T
Sbjct: 435 LVMHLLSITPTLFNSFLFSLLGGFYLLLIQYPFLKT 470

>ref|NP_191083.1| disease resistance response protein-related; protein id:
           At3g55230.1 [Arabidopsis thaliana]
           gi|11282368|pir||T47662 disease resistance response/
           dirigent-like protein - Arabidopsis thaliana
           gi|7019656|emb|CAB75757.1| disease resistance response/
           dirigent-like protein [Arabidopsis thaliana]
          Length = 306

 Score = 31.6 bits (70), Expect = 8.8
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 484 SNSINNVLHQHL*PLLTWYLLSQRRNVTQSQDQNKFKELHSKDNPYM 624
           +NSINN+++ +  PLLT    SQ   V Q+ + N    L S + P++
Sbjct: 121 ANSINNLINPNTAPLLTGLSGSQANTVIQNSNGNSQGSLSSNNLPFV 167

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,526,136
Number of Sequences: 1393205
Number of extensions: 9711466
Number of successful extensions: 16471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16470
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MRL013c07_f BP084368 1 464 2 MFL008h08_f BP033702 24 387 3 SPDL073c02_f BP056509 63 585 4 MPDL039d03_f AV778477 65 575 5 MFBL007b03_f BP041612 80 505 6 SPDL081c09_f BP057043 90 596 7 SPDL050c09_f BP055140 98 630 8 MPDL023d05_f AV777661 107 581 9 SPDL079h09_f BP056944 124 624

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