Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004866A_C01 KMC004866A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84921 hypothetical protein At2g47980 [imported] - Arabidop... 94 1e-18
ref|NP_566119.1| putative putative sister-chromatide cohesion pr... 94 1e-18
gb|AAM61411.1| putative sister-chromatide cohesion protein [Arab... 94 1e-18
gb|AAM62539.1| unknown [Arabidopsis thaliana] gi|24417366|gb|AAN... 42 0.006
gb|AAH42250.1| Similar to acidic (leucine-rich) nuclear phosphop... 40 0.017
>pir||H84921 hypothetical protein At2g47980 [imported] - Arabidopsis thaliana
Length = 921
Score = 93.6 bits (231), Expect = 1e-18
Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = -1
Query: 528 RPYHTFIDNLRDKYAKNEGFQDEKEGVSIRRRGRPRKRQNIPAKKLFDDQSSSEDEDSIS 349
RP TF++ L +K KNE QD+KE ++RRRGRPRKR K+LFD+QS S++++SIS
Sbjct: 826 RPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKRLFDEQSGSDEDESIS 885
Query: 348 ASEQDGGRQEED--DEDAPLIQSIRSSSKLRSLGVSREE 238
GG ED DEDAPLI++IRS+++ ++L R +
Sbjct: 886 -----GGSDREDKLDEDAPLIETIRSAARRKALKGERSK 919
>ref|NP_566119.1| putative putative sister-chromatide cohesion protein; protein id:
At2g47980.1, supported by cDNA: 11935., supported by
cDNA: gi_17380917, supported by cDNA: gi_20258986
[Arabidopsis thaliana] gi|5123720|emb|CAB45374.1|
stromalin protein [Arabidopsis thaliana]
gi|17380918|gb|AAL36271.1| putative putative
sister-chromatide cohesion protein [Arabidopsis thaliana]
gi|20197313|gb|AAC63652.2| putative putative
sister-chromatide cohesion protein [Arabidopsis thaliana]
gi|20197564|gb|AAM15132.1| putative putative
sister-chromatide cohesion protein [Arabidopsis thaliana]
gi|20258987|gb|AAM14209.1| putative sister-chromatide
cohesion protein [Arabidopsis thaliana]
Length = 1098
Score = 93.6 bits (231), Expect = 1e-18
Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = -1
Query: 528 RPYHTFIDNLRDKYAKNEGFQDEKEGVSIRRRGRPRKRQNIPAKKLFDDQSSSEDEDSIS 349
RP TF++ L +K KNE QD+KE ++RRRGRPRKR K+LFD+QS S++++SIS
Sbjct: 1003 RPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKRLFDEQSGSDEDESIS 1062
Query: 348 ASEQDGGRQEED--DEDAPLIQSIRSSSKLRSLGVSREE 238
GG ED DEDAPLI++IRS+++ ++L R +
Sbjct: 1063 -----GGSDREDKLDEDAPLIETIRSAARRKALKGERSK 1096
>gb|AAM61411.1| putative sister-chromatide cohesion protein [Arabidopsis thaliana]
Length = 1098
Score = 93.6 bits (231), Expect = 1e-18
Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = -1
Query: 528 RPYHTFIDNLRDKYAKNEGFQDEKEGVSIRRRGRPRKRQNIPAKKLFDDQSSSEDEDSIS 349
RP TF++ L +K KNE QD+KE ++RRRGRPRKR K+LFD+QS S++++SIS
Sbjct: 1003 RPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKRLFDEQSGSDEDESIS 1062
Query: 348 ASEQDGGRQEED--DEDAPLIQSIRSSSKLRSLGVSREE 238
GG ED DEDAPLI++IRS+++ ++L R +
Sbjct: 1063 -----GGSDREDKLDEDAPLIETIRSAARRKALKGERSK 1096
>gb|AAM62539.1| unknown [Arabidopsis thaliana] gi|24417366|gb|AAN60293.1| unknown
[Arabidopsis thaliana]
Length = 131
Score = 41.6 bits (96), Expect = 0.006
Identities = 28/70 (40%), Positives = 37/70 (52%)
Frame = -1
Query: 441 RRRGRPRKRQNIPAKKLFDDQSSSEDEDSISASEQDGGRQEEDDEDAPLIQSIRSSSKLR 262
RRRGRPRK N+ + F + S EDED E+ +EED+E +I + K+R
Sbjct: 29 RRRGRPRK--NLENPEDFKKEESEEDED----YEEYEDEEEEDEEAEVVINREKLKKKVR 82
Query: 261 SLGVSREESQ 232
S S EE Q
Sbjct: 83 SSSGSMEEEQ 92
>gb|AAH42250.1| Similar to acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Xenopus laevis]
Length = 239
Score = 40.0 bits (92), Expect = 0.017
Identities = 26/96 (27%), Positives = 39/96 (40%)
Frame = -1
Query: 525 PYHTFIDNLRDKYAKNEGFQDEKEGVSIRRRGRPRKRQNIPAKKLFDDQSSSEDEDSISA 346
P TF+D + E E + ++ ++ F+D+ EDED
Sbjct: 140 PKLTFLDGFDADDQEAPDSDPEAEDLEENGEDGEEDEEDDEEEEEFEDELDDEDEDEEGE 199
Query: 345 SEQDGGRQEEDDEDAPLIQSIRSSSKLRSLGVSREE 238
E+DG ++EDDED P Q + L G EE
Sbjct: 200 EEEDGEEEDEDDEDVP--QGEKRKRDLSDEGEEEEE 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,722,702
Number of Sequences: 1393205
Number of extensions: 8314905
Number of successful extensions: 55378
Number of sequences better than 10.0: 323
Number of HSP's better than 10.0 without gapping: 33341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48193
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
