Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004865A_C01 KMC004865A_c01
(430 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20879.1| putative IkappaB kinase complex-associated prote... 41 0.003
ref|NP_196872.1| putative protein; protein id: At5g13680.1 [Arab... 39 0.015
dbj|BAB32673.1| vitellogenin-2 [Periplaneta americana] 33 1.1
gb|EAA29753.1| hypothetical protein [Neurospora crassa] 31 3.1
gb|AAM97788.1| serine/threonine kinase [Ustilago maydis] 31 4.1
>dbj|BAC20879.1| putative IkappaB kinase complex-associated protein [Oryza sativa
(japonica cultivar-group)]
Length = 1337
Score = 41.2 bits (95), Expect = 0.003
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 428 DTISNDTINEQAHTLEQYTRKVKV-EMHNLEALSWRIKVFLP 306
DT+SND I+E AHTLE Y + ++ + + E WRIK P
Sbjct: 1285 DTVSNDKIDENAHTLENYVKMLRAHQSADSETTCWRIKALSP 1326
>ref|NP_196872.1| putative protein; protein id: At5g13680.1 [Arabidopsis thaliana]
gi|9758034|dbj|BAB08695.1|
gene_id:MSH12.15~ref|NP_003631.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 1319
Score = 38.9 bits (89), Expect = 0.015
Identities = 13/40 (32%), Positives = 28/40 (69%)
Frame = -3
Query: 428 DTISNDTINEQAHTLEQYTRKVKVEMHNLEALSWRIKVFL 309
DT+S+++++E+ + E+Y +K + + +A SW +KVF+
Sbjct: 1278 DTVSSESVDEEVYCFERYAQKTRSTARDSDAFSWMLKVFI 1317
>dbj|BAB32673.1| vitellogenin-2 [Periplaneta americana]
Length = 1876
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +1
Query: 145 RKINLHNFHPPSSSSSSSSTHILLNPETTKNPNAP 249
R IN++N SSSSSSS ++L P PN P
Sbjct: 403 RSINMYNDSSSSSSSSSSEEYLLPRPHIENAPNIP 437
>gb|EAA29753.1| hypothetical protein [Neurospora crassa]
Length = 1015
Score = 31.2 bits (69), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (46%)
Frame = +1
Query: 73 SLYNDNNKFSGITQS*F*MDSRP*RKINLHNFHPPSSSSSSSSTHILLNPETTKNPNAPT 252
+L N ++K S + S + L PSS +S+ S+ +L NP ++ N N +
Sbjct: 797 ALSNPSSKASNPSSKILFNPSSSSKNTELKALSNPSSKASNPSSDVLSNPSSSSNANPSS 856
Query: 253 SSNSKQKIS 279
SS+S S
Sbjct: 857 SSSSNPSSS 865
>gb|AAM97788.1| serine/threonine kinase [Ustilago maydis]
Length = 746
Score = 30.8 bits (68), Expect = 4.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 172 PPSSSSSSSSTHILLNPETTKNPNAPTSSNS 264
PPSSS++ +++ + P +T N +PTSS++
Sbjct: 12 PPSSSANRAASSLAFQPASTSNSASPTSSST 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,051,918
Number of Sequences: 1393205
Number of extensions: 7294574
Number of successful extensions: 25420
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24712
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
