Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004864A_C01 KMC004864A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201551.1| porin-like protein; protein id: At5g67500.1, su... 168 5e-41
ref|NP_190561.1| porin - like protein; protein id: At3g49920.1 [... 149 4e-35
gb|AAO72587.1| porin-like protein [Oryza sativa (japonica cultiv... 142 3e-33
gb|AAD56651.1|AF178950_1 voltage-dependent anion channel protein... 120 2e-26
pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| p... 119 2e-26
>ref|NP_201551.1| porin-like protein; protein id: At5g67500.1, supported by cDNA:
12964. [Arabidopsis thaliana] gi|9757871|dbj|BAB08458.1|
porin-like protein [Arabidopsis thaliana]
gi|21537313|gb|AAM61654.1| porin-like protein
[Arabidopsis thaliana]
Length = 276
Score = 168 bits (426), Expect = 5e-41
Identities = 77/105 (73%), Positives = 96/105 (91%)
Frame = -3
Query: 609 SIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRARL 430
SIILGDKGDS+KASYLHH D+ K++AAV E+ RKFSTNENT TVGG +AIDH T V+A+L
Sbjct: 172 SIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKL 231
Query: 429 NNHGKLGALLQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 295
NNHG LGALLQHE++P+S++T+SSE+DTKAL+K+PRFGL++ALKP
Sbjct: 232 NNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276
>ref|NP_190561.1| porin - like protein; protein id: At3g49920.1 [Arabidopsis
thaliana] gi|11358629|pir||T46058 porin-like protein -
Arabidopsis thaliana gi|6723437|emb|CAB66930.1|
porin-like protein [Arabidopsis thaliana]
Length = 226
Score = 149 bits (375), Expect = 4e-35
Identities = 70/105 (66%), Positives = 89/105 (84%)
Frame = -3
Query: 609 SIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRARL 430
SIILGDKGDSIKASY+++LD+ +SA V E+ RK STNE T TVGG +A+DHLT V+A+L
Sbjct: 122 SIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKL 181
Query: 429 NNHGKLGALLQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 295
N++GK GALLQHE +PKS++TIS E+DTK LDK PR GL+++LKP
Sbjct: 182 NSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226
>gb|AAO72587.1| porin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 277
Score = 142 bits (359), Expect = 3e-33
Identities = 69/106 (65%), Positives = 87/106 (81%)
Frame = -3
Query: 612 ASIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRAR 433
A+I+L DKGD++K S ++HLD +KS+ VAE+TR+ STNENT TVGG + +D T V+AR
Sbjct: 172 AAIVLADKGDTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKAR 231
Query: 432 LNNHGKLGALLQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 295
LNN GKL ALLQHE+ PKSVLTIS E DTKALD+ P+FGLA+AL+P
Sbjct: 232 LNNTGKLAALLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
>gb|AAD56651.1|AF178950_1 voltage-dependent anion channel protein 1a [Zea mays]
Length = 276
Score = 120 bits (300), Expect = 2e-26
Identities = 57/106 (53%), Positives = 79/106 (73%)
Frame = -3
Query: 612 ASIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRAR 433
AS+ L +KGDS+ +Y H + +L +A AE+T FSTNENT T GG A+D LT ++AR
Sbjct: 171 ASLNLNNKGDSLTGAYYHKVSELTNTAVGAELTHSFSTNENTLTFGGQHALDPLTVLKAR 230
Query: 432 LNNHGKLGALLQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 295
+NN GK AL+QHE PKS++TIS+EVDTK ++K+ + G+A+ALKP
Sbjct: 231 INNSGKASALIQHEWRPKSLVTISAEVDTKTIEKSSKVGIAVALKP 276
>pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| porin
[Mesembryanthemum crystallinum]
Length = 276
Score = 119 bits (299), Expect = 2e-26
Identities = 58/106 (54%), Positives = 77/106 (71%)
Frame = -3
Query: 612 ASIILGDKGDSIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRAR 433
AS+ L DKGD++ ASY H + L SA AE+ FSTN+NT T+G AID LT ++ R
Sbjct: 171 ASLTLNDKGDTLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLTNLKGR 230
Query: 432 LNNHGKLGALLQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 295
+NN GK AL+QHE PKS++T S+EVDTKA++K+ + GLA+ALKP
Sbjct: 231 VNNFGKATALIQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,103,368
Number of Sequences: 1393205
Number of extensions: 11540687
Number of successful extensions: 26320
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26300
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
