Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004863A_C01 KMC004863A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC05613.1| P0458E05.13 [Oryza sativa (japonica cultivar-gro... 133 2e-30
ref|NP_196541.2| putative protein; protein id: At5g09790.1, supp... 131 6e-30
pir||T49919 hypothetical protein F17I14.20 - Arabidopsis thalian... 131 6e-30
dbj|BAB09537.1| gene_id:MTH16.26~ref|NP_006757.1~similar to unkn... 131 6e-30
ref|NP_197821.1| putative protein; protein id: At5g24330.1 [Arab... 128 5e-29
>dbj|BAC05613.1| P0458E05.13 [Oryza sativa (japonica cultivar-group)]
Length = 385
Score = 133 bits (334), Expect = 2e-30
Identities = 61/80 (76%), Positives = 69/80 (86%)
Frame = -3
Query: 544 DESKKLVICADKRGNISRFINGINNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKG 365
D SK+LVIC DKRGNISRFINGINNHT +GKKK+N K VRY++DG+S V LVA RDIA G
Sbjct: 306 DPSKRLVICPDKRGNISRFINGINNHTLDGKKKKNIKCVRYDIDGESHVLLVACRDIACG 365
Query: 364 ERLYYDYNGYEHRYPTENFV 305
E+LYYDYNGYEH YPT +FV
Sbjct: 366 EKLYYDYNGYEHEYPTHHFV 385
>ref|NP_196541.2| putative protein; protein id: At5g09790.1, supported by cDNA:
gi_17381239 [Arabidopsis thaliana]
gi|17381240|gb|AAL36039.1| AT5g09790/F17I14_20
[Arabidopsis thaliana] gi|21464579|gb|AAM52244.1|
AT5g09790/F17I14_20 [Arabidopsis thaliana]
Length = 352
Score = 131 bits (329), Expect = 6e-30
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = -3
Query: 544 DESKKLVICADKRGNISRFINGINNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKG 365
D SK LVIC DK GNISRFINGINNH KKKQNCK VRY+++G+ RV LVATRDI+KG
Sbjct: 273 DPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSINGECRVLLVATRDISKG 332
Query: 364 ERLYYDYNGYEHRYPTENFV 305
ERLYYDYNGYEH YPT +F+
Sbjct: 333 ERLYYDYNGYEHEYPTHHFL 352
>pir||T49919 hypothetical protein F17I14.20 - Arabidopsis thaliana
gi|7671410|emb|CAB89351.1| putative protein [Arabidopsis
thaliana]
Length = 379
Score = 131 bits (329), Expect = 6e-30
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = -3
Query: 544 DESKKLVICADKRGNISRFINGINNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKG 365
D SK LVIC DK GNISRFINGINNH KKKQNCK VRY+++G+ RV LVATRDI+KG
Sbjct: 300 DPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSINGECRVLLVATRDISKG 359
Query: 364 ERLYYDYNGYEHRYPTENFV 305
ERLYYDYNGYEH YPT +F+
Sbjct: 360 ERLYYDYNGYEHEYPTHHFL 379
>dbj|BAB09537.1| gene_id:MTH16.26~ref|NP_006757.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 378
Score = 131 bits (329), Expect = 6e-30
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = -3
Query: 544 DESKKLVICADKRGNISRFINGINNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKG 365
D SK LVIC DK GNISRFINGINNH KKKQNCK VRY+++G+ RV LVATRDI+KG
Sbjct: 299 DPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSINGECRVLLVATRDISKG 358
Query: 364 ERLYYDYNGYEHRYPTENFV 305
ERLYYDYNGYEH YPT +F+
Sbjct: 359 ERLYYDYNGYEHEYPTHHFL 378
>ref|NP_197821.1| putative protein; protein id: At5g24330.1 [Arabidopsis thaliana]
Length = 349
Score = 128 bits (321), Expect = 5e-29
Identities = 57/80 (71%), Positives = 70/80 (87%)
Frame = -3
Query: 544 DESKKLVICADKRGNISRFINGINNHTQEGKKKQNCKSVRYNVDGQSRVFLVATRDIAKG 365
D S+ LVIC D+R NI+RFI+GINNH+ EG+KKQN K VR+N++G++RV LVA RDI+KG
Sbjct: 270 DPSQCLVICPDRRSNIARFISGINNHSPEGRKKQNLKCVRFNINGEARVLLVANRDISKG 329
Query: 364 ERLYYDYNGYEHRYPTENFV 305
ERLYYDYNGYEH YPTE+FV
Sbjct: 330 ERLYYDYNGYEHEYPTEHFV 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,492,094
Number of Sequences: 1393205
Number of extensions: 8645287
Number of successful extensions: 20655
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 19942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20560
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
