Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004858A_C01 KMC004858A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680171.1| similar to reverse transcriptase, putative; pro... 47 2e-04
ref|NP_190141.1| putative protein; protein id: At3g45550.1 [Arab... 46 2e-04
ref|NP_175227.1| reverse transcriptase, putative; protein id: At... 43 0.002
ref|NP_187562.1| putative non-LTR reverse transcriptase; protein... 42 0.003
ref|NP_180125.1| putative non-LTR retroelement reverse transcrip... 42 0.003
>ref|NP_680171.1| similar to reverse transcriptase, putative; protein id: At5g17725.1
[Arabidopsis thaliana]
Length = 721
Score = 46.6 bits (109), Expect = 2e-04
Identities = 31/108 (28%), Positives = 50/108 (45%)
Frame = +2
Query: 179 NNLHKRRVLNSPLCPICFAAPETVEHAIFHWNGTRLVGLGSQFQWNTSDASRFDSGLLSK 358
+N+ K+R+ + CP C + ETV H +FH + RL + S + F +GL+ +
Sbjct: 435 SNMTKKRLTKAGECPRCGSHDETVNHVLFHCSFARLP--------SESIYTNFANGLVKE 486
Query: 359 IECLRLREENFVQECSSLGCLLWEIWKTRNITVFEGKLPDPTGTLIRA 502
+ +EE + L+W +WK RN F + D L RA
Sbjct: 487 ND----QEEEVHKRKEIWPWLIWRLWKARNNVCFNNQHEDAQQVLERA 530
>ref|NP_190141.1| putative protein; protein id: At3g45550.1 [Arabidopsis thaliana]
gi|11357921|pir||T47495 hypothetical protein F9K21.130 -
Arabidopsis thaliana gi|6996258|emb|CAB75484.1| putative
protein [Arabidopsis thaliana]
Length = 851
Score = 46.2 bits (108), Expect = 2e-04
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Frame = +2
Query: 179 NNLHKRRVLNSPLCPICFAAPETVEHAIFHWNGTRLVGLGSQFQWNTSDASRFDSGLLSK 358
+ L R + P CP C E++ HA+F + W SD + S +LS
Sbjct: 692 DRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMA-------WRLSDTPLYRSSILSN 744
Query: 359 ------IECLRLREENFVQECSSL--GCLLWEIWKTRNITVFEGKLPDPTGTLIRAQALA 514
L L + + + L LLW IWK RN VF P+ T++RA+A
Sbjct: 745 NIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAET 804
Query: 515 GE 520
E
Sbjct: 805 NE 806
>ref|NP_175227.1| reverse transcriptase, putative; protein id: At1g47910.1 [Arabidopsis
thaliana] gi|25405244|pir||E96519 probable reverse
transcriptase, 16838-20266 [imported] - Arabidopsis
thaliana gi|12323627|gb|AAG51783.1|AC079679_3 reverse
transcriptase, putative; 16838-20266 [Arabidopsis
thaliana]
Length = 1142
Score = 43.1 bits (100), Expect = 0.002
Identities = 31/107 (28%), Positives = 50/107 (45%)
Frame = +2
Query: 182 NLHKRRVLNSPLCPICFAAPETVEHAIFHWNGTRLVGLGSQFQWNTSDASRFDSGLLSKI 361
NL KR +L C C A+ E++ H +F + R + SQ T+ + + + +
Sbjct: 854 NLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIP--TAPGIFPSNSIFTNL 911
Query: 362 ECLRLREENFVQECSSLGCLLWEIWKTRNITVFEGKLPDPTGTLIRA 502
+ L R + V + + ++W IWK RN VFE DP L+ A
Sbjct: 912 DHLFWRIPSGV-DSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLA 957
>ref|NP_187562.1| putative non-LTR reverse transcriptase; protein id: At3g09510.1
[Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
Length = 484
Score = 42.4 bits (98), Expect = 0.003
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +2
Query: 212 PLCPICFAAPETVEHAIFHWNGTRLVGLGSQFQWNTSDASRFDSGLLSK-IECLRLREEN 388
P CP C E++ HA+F + W SD+S + L+S E N
Sbjct: 198 PSCPRCHRENESINHALFTCPFATMA-------WRLSDSSLIRNQLMSNDFEENISNILN 250
Query: 389 FVQECSSLGC-------LLWEIWKTRNITVFEGKLPDPTGTLIRAQA 508
FVQ+ + L+W IWK RN VF P+ T++ A+A
Sbjct: 251 FVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 297
>ref|NP_180125.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g25550.1 [Arabidopsis thaliana]
gi|25412331|pir||G84649 hypothetical protein At2g25550
[imported] - Arabidopsis thaliana
gi|4432866|gb|AAD20714.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1750
Score = 42.4 bits (98), Expect = 0.003
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +2
Query: 212 PLCPICFAAPETVEHAIFHWNGTRLVGLGSQFQWNTSDASRFDSGLLSK-IECLRLREEN 388
P CP C E++ HA+F + W SD+S + L+S E N
Sbjct: 1464 PSCPRCHRENESINHALFTCPFATMA-------WRLSDSSLIRNQLMSNDFEENISNILN 1516
Query: 389 FVQECSSLGC-------LLWEIWKTRNITVFEGKLPDPTGTLIRAQA 508
FVQ+ + L+W IWK RN VF P+ T++ A+A
Sbjct: 1517 FVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 1563
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,594,037
Number of Sequences: 1393205
Number of extensions: 11688553
Number of successful extensions: 33602
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 32286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33565
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
