Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004856A_C01 KMC004856A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 99 3e-20
gb|AAC49827.1| desacetoxyvindoline 4-hydroxylase [Catharanthus r... 95 3e-19
sp|O04847|DV4H_CATRO Desacetoxyvindoline 4-hydroxylase gi|743324... 95 3e-19
gb|AAC49826.1| desacetoxyvindoline 4-hydroxylase [Catharanthus r... 95 3e-19
ref|NP_180641.1| putative dioxygenase; protein id: At2g30830.1 [... 94 5e-19
>ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59530.1 [Arabidopsis thaliana]
gi|8885557|dbj|BAA97487.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
Length = 364
Score = 98.6 bits (244), Expect = 3e-20
Identities = 52/87 (59%), Positives = 62/87 (70%)
Frame = -3
Query: 422 LQLITNDIFISVYHRVLSSHRGPRVSAASFFLQYDSDEGKSKVYGPIKELLSEENPPIYK 243
LQLITND FISV HRVL++ RGPR+S ASFF S S VYGP+KEL+SEENPP Y+
Sbjct: 280 LQLITNDKFISVEHRVLANTRGPRISVASFFSS--SIRENSTVYGPMKELVSEENPPKYR 337
Query: 242 DTTIADMMAHHLSKGLDGNSALHPFRL 162
DTT+ + + KGLDG S L FR+
Sbjct: 338 DTTLREYSEGYFKKGLDGTSHLSNFRI 364
>gb|AAC49827.1| desacetoxyvindoline 4-hydroxylase [Catharanthus roseus]
Length = 382
Score = 95.1 bits (235), Expect = 3e-19
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = -3
Query: 425 LLQLITNDIFISVYHRVLSSHRGPRVSAA-SFFLQYDSDEGKS-KVYGPIKELLSEENPP 252
LLQLITND F SV HRVL++ GPR+S A +F ++ + EG S ++YGPIKEL+SEENPP
Sbjct: 291 LLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPP 350
Query: 251 IYKDTTIADMMAHHLSKGLDGNSALHPFRL*N 156
IYK+ T+ D + +K D +S+L PFRL N
Sbjct: 351 IYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 382
>sp|O04847|DV4H_CATRO Desacetoxyvindoline 4-hydroxylase gi|7433242|pir||T07914 probable
desacetoxyvindoline-4-hydroxylase (EC 1.14.11.-) -
Madagascar periwinkle gi|2352812|gb|AAB97311.1|
desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
Length = 401
Score = 95.1 bits (235), Expect = 3e-19
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = -3
Query: 425 LLQLITNDIFISVYHRVLSSHRGPRVSAA-SFFLQYDSDEGKS-KVYGPIKELLSEENPP 252
LLQLITND F SV HRVL++ GPR+S A +F ++ + EG S ++YGPIKEL+SEENPP
Sbjct: 310 LLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPP 369
Query: 251 IYKDTTIADMMAHHLSKGLDGNSALHPFRL*N 156
IYK+ T+ D + +K D +S+L PFRL N
Sbjct: 370 IYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 401
>gb|AAC49826.1| desacetoxyvindoline 4-hydroxylase [Catharanthus roseus]
Length = 386
Score = 95.1 bits (235), Expect = 3e-19
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = -3
Query: 425 LLQLITNDIFISVYHRVLSSHRGPRVSAA-SFFLQYDSDEGKS-KVYGPIKELLSEENPP 252
LLQLITND F SV HRVL++ GPR+S A +F ++ + EG S ++YGPIKEL+SEENPP
Sbjct: 295 LLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPP 354
Query: 251 IYKDTTIADMMAHHLSKGLDGNSALHPFRL*N 156
IYK+ T+ D + +K D +S+L PFRL N
Sbjct: 355 IYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 386
>ref|NP_180641.1| putative dioxygenase; protein id: At2g30830.1 [Arabidopsis
thaliana] gi|25285696|pir||C84713 probable dioxygenase
[imported] - Arabidopsis thaliana
gi|3201632|gb|AAC20718.1| putative dioxygenase
[Arabidopsis thaliana]
Length = 358
Score = 94.4 bits (233), Expect = 5e-19
Identities = 49/89 (55%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = -3
Query: 425 LLQLITNDIFISVYHRVLSSH-RGPRVSAASFFLQYDSDEGKSKVYGPIKELLSEENPPI 249
LLQLITND F+SV HRVL++ PR+S+ASFF+ +E +VYGP+KELLS++NPP
Sbjct: 273 LLQLITNDKFVSVEHRVLANRGEEPRISSASFFMHTIPNE---QVYGPMKELLSKQNPPK 329
Query: 248 YKDTTIADMMAHHLSKGLDGNSALHPFRL 162
Y++TT +M H+L++GLDG S L FR+
Sbjct: 330 YRNTTTTEMARHYLARGLDGTSPLLHFRI 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,262,240
Number of Sequences: 1393205
Number of extensions: 8167742
Number of successful extensions: 18357
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 17900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18283
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
