Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004855A_C01 KMC004855A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176215.1| gamma-adaptin, putative; protein id: At1g60070.... 207 8e-53
emb|CAB39730.1| adaptor protein complex AP-1 large subunit; gamm... 201 5e-51
ref|NP_173802.1| gamma-adaptin, putative; protein id: At1g23900.... 201 5e-51
pir||T51951 gamma-adaptin 1 [imported] - Arabidopsis thaliana gi... 201 5e-51
gb|AAK98709.1|AC069158_21 Putative gamma-adaptin 1 [Oryza sativa] 197 7e-50
>ref|NP_176215.1| gamma-adaptin, putative; protein id: At1g60070.1 [Arabidopsis
thaliana] gi|25404261|pir||B96625 hypothetical protein
T2K10.12 [imported] - Arabidopsis thaliana
gi|4249386|gb|AAD14483.1|AAD14483 Strong similarity to
gb|AF061286 gamma-adaptin 1 from Arabidopsis thaliana.
EST gb|H37393 comes from this gene
Length = 867
Score = 207 bits (526), Expect = 8e-53
Identities = 104/113 (92%), Positives = 107/113 (94%)
Frame = +3
Query: 195 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSIHANDHDYRHRNLAKLMSIH 374
MNPFSSGTRL DMIRAIRA KTAAEERAVVRKECAAIR SI+ ND DYRHR+LAKLM IH
Sbjct: 1 MNPFSSGTRLSDMIRAIRASKTAAEERAVVRKECAAIRASINENDQDYRHRDLAKLMFIH 60
Query: 375 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQD 533
MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNS+KQD
Sbjct: 61 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113
>emb|CAB39730.1| adaptor protein complex AP-1 large subunit; gamma-adaptin 2
[Arabidopsis thaliana]
Length = 876
Score = 201 bits (511), Expect = 5e-51
Identities = 102/113 (90%), Positives = 105/113 (92%)
Frame = +3
Query: 195 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSIHANDHDYRHRNLAKLMSIH 374
MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECA IR I+ +D RHRNLAKLM IH
Sbjct: 1 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECADIRALINEDDPHDRHRNLAKLMFIH 60
Query: 375 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQD 533
MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNS+KQD
Sbjct: 61 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113
>ref|NP_173802.1| gamma-adaptin, putative; protein id: At1g23900.1 [Arabidopsis
thaliana] gi|28393791|gb|AAO42305.1| putative
gamma-adaptin [Arabidopsis thaliana]
gi|28973305|gb|AAO63977.1| putative gamma-adaptin
[Arabidopsis thaliana]
Length = 876
Score = 201 bits (511), Expect = 5e-51
Identities = 102/113 (90%), Positives = 105/113 (92%)
Frame = +3
Query: 195 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSIHANDHDYRHRNLAKLMSIH 374
MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECA IR I+ +D RHRNLAKLM IH
Sbjct: 1 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECADIRALINEDDPHDRHRNLAKLMFIH 60
Query: 375 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQD 533
MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNS+KQD
Sbjct: 61 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113
>pir||T51951 gamma-adaptin 1 [imported] - Arabidopsis thaliana
gi|3372671|gb|AAC28338.1| gamma-adaptin 1 [Arabidopsis
thaliana] gi|4704741|gb|AAD28247.1|AF124524_1
gamma-adaptin 1 [Arabidopsis thaliana]
Length = 876
Score = 201 bits (511), Expect = 5e-51
Identities = 102/113 (90%), Positives = 105/113 (92%)
Frame = +3
Query: 195 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSIHANDHDYRHRNLAKLMSIH 374
MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECA IR I+ +D RHRNLAKLM IH
Sbjct: 1 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECADIRALINEDDPHDRHRNLAKLMFIH 60
Query: 375 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQD 533
MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNS+KQD
Sbjct: 61 MLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113
>gb|AAK98709.1|AC069158_21 Putative gamma-adaptin 1 [Oryza sativa]
Length = 1354
Score = 197 bits (501), Expect = 7e-50
Identities = 97/114 (85%), Positives = 105/114 (92%)
Frame = +3
Query: 192 AMNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSIHANDHDYRHRNLAKLMSI 371
AM PFSSGTRLRDMIRAIRACKTAAEERAVVR+ECA IR++I N + RHRN+AKLM I
Sbjct: 16 AMGPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAEIREAIGENQQEIRHRNMAKLMFI 75
Query: 372 HMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQD 533
HMLGYPTHFGQMECLKLIA+ G+PEKRIGYLGLMLLLDERQEVLMLVTNS+KQD
Sbjct: 76 HMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,438,281
Number of Sequences: 1393205
Number of extensions: 12096863
Number of successful extensions: 42217
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 38533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41997
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
